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1RNL
Asym. Unit
Info
Asym.Unit (39 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (133 KB)
Biol.Unit 3 (67 KB)
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(1)
Title
:
THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL FROM NARL
Authors
:
I. Baikalov, I. Schroder, M. Kaczor-Grzeskowiak, K. Grzeskowiak, R. P. Gunsalus, R. E. Dickerson
Date
:
17 Apr 96 (Deposition) - 08 Nov 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (4x)
Biol. Unit 3: A (2x)
Keywords
:
Response Regulators, Two-Component Systems, Signal Transduction Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Baikalov, I. Schroder, M. Kaczor-Grzeskowiak, K. Grzeskowiak, R. P. Gunsalus, R. E. Dickerson
Structure Of The Escherichia Coli Response Regulator Narl.
Biochemistry V. 35 11053 1996
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: PLATINUM (II) ION (PTa)
2b: PLATINUM (II) ION (PTb)
2c: PLATINUM (II) ION (PTc)
2d: PLATINUM (II) ION (PTd)
2e: PLATINUM (II) ION (PTe)
2f: PLATINUM (II) ION (PTf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
PT
6
Ligand/Ion
PLATINUM (II) ION
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Sites
(10, 10)
Info
All Sites
01: 1 (UNKNOWN)
02: AC1 (SOFTWARE)
03: AC2 (SOFTWARE)
04: AC3 (SOFTWARE)
05: AC4 (SOFTWARE)
06: AC5 (SOFTWARE)
07: AC6 (SOFTWARE)
08: AC7 (SOFTWARE)
09: AC8 (SOFTWARE)
10: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
1
UNKNOWN
ASP A:59 , ASP A:13 , ASP A:14 , LYS A:109
PHOSPHORYLATION SITE.
02
AC1
SOFTWARE
MET A:28 , PT A:302 , PT A:303
BINDING SITE FOR RESIDUE PT A 301
03
AC2
SOFTWARE
MET A:28 , PT A:301
BINDING SITE FOR RESIDUE PT A 302
04
AC3
SOFTWARE
MET A:28 , PT A:301 , HOH A:348
BINDING SITE FOR RESIDUE PT A 303
05
AC4
SOFTWARE
GLU A:127 , MET A:175 , PT A:305 , PT A:306
BINDING SITE FOR RESIDUE PT A 304
06
AC5
SOFTWARE
MET A:175 , PT A:304 , PT A:306
BINDING SITE FOR RESIDUE PT A 305
07
AC6
SOFTWARE
MET A:175 , PT A:304 , PT A:305
BINDING SITE FOR RESIDUE PT A 306
08
AC7
SOFTWARE
LEU A:60 , ASN A:61 , VAL A:88 , HOH A:369
BINDING SITE FOR RESIDUE GOL A 307
09
AC8
SOFTWARE
LYS A:23 , VAL A:34 , GLU A:37 , ARG A:159 , ASP A:162 , LYS A:165 , LEU A:180 , GOL A:309 , HOH A:374
BINDING SITE FOR RESIDUE GOL A 308
10
AC9
SOFTWARE
LYS A:23 , ILE A:26 , SER A:27 , THR A:33 , VAL A:34 , GOL A:308 , HOH A:336
BINDING SITE FOR RESIDUE GOL A 309
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: RESPONSE_REGULATORY (A:8-124,A:8-124,A:8-124,A:8-124)
2: HTH_LUXR_2 (A:155-214,A:155-214,A:155-214,A:15...)
3: HTH_LUXR_1 (A:170-197,A:170-197,A:170-197,A:17...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RESPONSE_REGULATORY
PS50110
Response regulatory domain profile.
NARL_ECO57
8-124
1
A:8-124
NARL_ECOL6
8-124
1
A:8-124
NARL_ECOLI
8-124
1
A:8-124
NARL_SHIFL
8-124
1
A:8-124
2
HTH_LUXR_2
PS50043
LuxR-type HTH domain profile.
NARL_ECO57
149-214
1
A:155-214
NARL_ECOL6
149-214
1
A:155-214
NARL_ECOLI
149-214
1
A:155-214
NARL_SHIFL
149-214
1
A:155-214
3
HTH_LUXR_1
PS00622
LuxR-type HTH domain signature.
NARL_ECO57
170-197
1
A:170-197
NARL_ECOL6
170-197
1
A:170-197
NARL_ECOLI
170-197
1
A:170-197
NARL_SHIFL
170-197
1
A:170-197
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1rnla1 (A:155-216)
2a: SCOP_d1rnla2 (A:5-142)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
C-terminal effector domain of the bipartite response regulators
(45)
Family
:
GerE-like (LuxR/UhpA family of transcriptional regulators)
(11)
Protein domain
:
Nitrate/nitrite response regulator (NarL)
(5)
Escherichia coli [TaxId: 562]
(5)
1a
d1rnla1
A:155-216
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
CheY-like
(258)
Family
:
CheY-related
(166)
Protein domain
:
Nitrate/nitrite response regulator (NarL), receiver domain
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1rnla2
A:5-142
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1rnlA01 (A:5-128)
2a: CATH_1rnlA02 (A:129-216)
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
K12 substr (Escherichia coli str)
(1)
1a
1rnlA01
A:5-128
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
K12 substr (Escherichia coli str)
(1)
2a
1rnlA02
A:129-216
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Response_reg_1rnlA01 (A:9-121)
2a: PFAM_GerE_1rnlA02 (A:155-210)
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Clans
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)
Organisms
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)
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)
Clan
:
CheY
(97)
Family
:
Response_reg
(94)
Escherichia coli (strain K12)
(13)
1a
Response_reg-1rnlA01
A:9-121
Clan
:
HTH
(544)
Family
:
GerE
(15)
Escherichia coli (strain K12)
(2)
2a
GerE-1rnlA02
A:155-210
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (39 KB)
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