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1RL2
Asym. Unit
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Asym.Unit (49 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (23 KB)
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(1)
Title
:
RIBOSOMAL PROTEIN L2 RNA-BINDING DOMAIN FROM BACILLUS STEAROTHERMOPHILUS
Authors
:
A. Nakagawa, H. Hosaka, T. Nakashima, I. Tanaka
Date
:
25 Mar 99 (Deposition) - 02 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ribosomal Protein, Rna-Binding Domain, Peptidyltransferease Center, X-Ray Diffraction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Nakagawa, T. Nakashima, M. Taniguchi, H. Hosaka, M. Kimura, I. Tanaka
The Three-Dimensional Structure Of The Rna-Binding Domain Of Ribosomal Protein L2; A Protein At The Peptidyl Transferase Center Of The Ribosome.
Embo J. V. 18 1459 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
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1
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1rl2a2 (A:60-125)
1b: SCOP_d1rl2b2 (B:60-125)
2a: SCOP_d1rl2a1 (A:126-195)
2b: SCOP_d1rl2b1 (B:126-196)
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Cold shock DNA-binding domain-like
(310)
Protein domain
:
N-terminal domain of ribosomal protein L2
(79)
Bacillus stearothermophilus [TaxId: 1422]
(1)
1a
d1rl2a2
A:60-125
1b
d1rl2b2
B:60-125
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Translation proteins SH3-like domain
(251)
Family
:
C-terminal domain of ribosomal protein L2
(79)
Protein domain
:
C-terminal domain of ribosomal protein L2
(79)
Bacillus stearothermophilus [TaxId: 1422]
(1)
2a
d1rl2a1
A:126-195
2b
d1rl2b1
B:126-196
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1rl2A01 (A:60-115)
1b: CATH_1rl2B01 (B:60-115)
2a: CATH_1rl2A02 (A:117-195)
2b: CATH_1rl2B02 (B:117-192)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(1)
1a
1rl2A01
A:60-115
1b
1rl2B01
B:60-115
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.30, no name defined]
(111)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(1)
2a
1rl2A02
A:117-195
2b
1rl2B02
B:117-192
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Ribosomal_L2_C_1rl2B01 (B:123-196)
1b: PFAM_Ribosomal_L2_C_1rl2B02 (B:123-196)
2a: PFAM_Ribosomal_L2_1rl2B03 (B:60-117)
2b: PFAM_Ribosomal_L2_1rl2B04 (B:60-117)
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Clan
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KOW
(56)
Family
:
Ribosomal_L2_C
(45)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(1)
1a
Ribosomal_L2_C-1rl2B01
B:123-196
1b
Ribosomal_L2_C-1rl2B02
B:123-196
Clan
:
OB
(224)
Family
:
Ribosomal_L2
(45)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(1)
2a
Ribosomal_L2-1rl2B03
B:60-117
2b
Ribosomal_L2-1rl2B04
B:60-117
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Asym.Unit (49 KB)
Header - Asym.Unit
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Biol.Unit 2 (23 KB)
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