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1RID
Biol. Unit 1
Info
Asym.Unit (107 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (51 KB)
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(1)
Title
:
VACCINIA COMPLEMENT PROTEIN IN COMPLEX WITH HEPARIN
Authors
:
V. K. Ganesh, S. A. Smith, G. J. Kotwal, K. H. M. Murthy
Date
:
17 Nov 03 (Deposition) - 22 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Complement, Regulation, Scr, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. K. Ganesh, S. A. Smith, G. J. Kotwal, K. H. M. Murthy
Structure Of Vaccinia Complement Protein In Complex With Heparin And Potential Implications For Complement Regulation.
Proc. Natl. Acad. Sci. Usa V. 101 8924 2004
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
1b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
1c: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSc)
1d: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSd)
1e: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSe)
1f: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSf)
1g: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSg)
1h: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSh)
2a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
2b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
2c: N,O6-DISULFO-GLUCOSAMINE (SGNc)
2d: N,O6-DISULFO-GLUCOSAMINE (SGNd)
2e: N,O6-DISULFO-GLUCOSAMINE (SGNe)
2f: N,O6-DISULFO-GLUCOSAMINE (SGNf)
2g: N,O6-DISULFO-GLUCOSAMINE (SGNg)
2h: N,O6-DISULFO-GLUCOSAMINE (SGNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
IDS
4
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
SGN
4
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SGN A:246 , HOH A:263 , HOH A:278 , HOH A:499 , CYS B:35 , LEU B:36 , PRO B:37
BINDING SITE FOR RESIDUE IDS A 245
2
AC2
SOFTWARE
LYS A:214 , IDS A:245 , IDS A:247 , HOH A:382 , HOH A:416 , HOH A:497 , HOH A:536 , HOH A:577 , HOH A:616 , LEU B:36 , HOH B:480
BINDING SITE FOR RESIDUE SGN A 246
3
AC3
SOFTWARE
LYS A:214 , CYS A:215 , TYR A:217 , TYR A:219 , SGN A:246 , SGN A:248 , HOH A:273 , HOH A:357 , HOH A:616 , ASN B:15
BINDING SITE FOR RESIDUE IDS A 247
4
AC4
SOFTWARE
TYR A:219 , LYS A:220 , IDS A:247 , IDS A:249 , HOH A:415 , HOH A:468 , HOH A:641 , ASN B:15 , THR B:19
BINDING SITE FOR RESIDUE SGN A 248
5
AC5
SOFTWARE
GLY A:218 , SGN A:248 , SGN A:250 , HOH A:297 , HOH A:669 , THR B:19
BINDING SITE FOR RESIDUE IDS A 249
6
AC6
SOFTWARE
LYS A:216 , TYR A:219 , ARG A:244 , IDS A:249 , IDS A:251 , HOH A:450 , HOH A:489 , HOH A:515
BINDING SITE FOR RESIDUE SGN A 250
7
AC7
SOFTWARE
ARG A:244 , SGN A:250 , SGN A:252 , HOH A:261 , HOH A:292 , HOH A:375 , HOH A:431 , HOH A:511 , HOH A:515 , HOH A:646 , HOH A:653
BINDING SITE FOR RESIDUE IDS A 251
8
AC8
SOFTWARE
IDS A:251 , HOH A:326 , HOH A:377 , HOH A:430 , HOH A:431 , HOH A:463 , HOH A:511
BINDING SITE FOR RESIDUE SGN A 252
9
AC9
SOFTWARE
PHE A:13 , SGN B:246 , HOH B:296 , HOH B:392 , HOH B:420 , HOH B:509 , HOH B:559 , HOH B:588 , HOH B:629 , HOH B:642
BINDING SITE FOR RESIDUE IDS B 245
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: SUSHI (A:65-126,A:127-184,A:185-244)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
VCP_VACCC
19-83
84-145
146-203
204-263
3
-
A:65-126
-
A:127-184
-
A:185-244
-
VCP_VACCW
19-83
84-145
146-203
204-263
3
-
A:65-126
-
A:127-184
-
A:185-244
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1rida1 (A:1-64)
1b: SCOP_d1rida2 (A:65-126)
1c: SCOP_d1rida3 (A:127-184)
1d: SCOP_d1rida4 (A:185-244)
1e: SCOP_d1ridb1 (B:1-64)
1f: SCOP_d1ridb2 (B:65-126)
1g: SCOP_d1ridb3 (B:127-184)
1h: SCOP_d1ridb4 (B:185-244)
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Protein Domains
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement control protein
(8)
Vaccinia virus [TaxId: 10245]
(8)
1a
d1rida1
A:1-64
1b
d1rida2
A:65-126
1c
d1rida3
A:127-184
1d
d1rida4
A:185-244
1e
d1ridb1
B:1-64
1f
d1ridb2
B:65-126
1g
d1ridb3
B:127-184
1h
d1ridb4
B:185-244
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1ridA02 (A:66-125)
1b: CATH_1ridB02 (B:66-125)
1c: CATH_1ridA04 (A:185-234)
1d: CATH_1ridB04 (B:185-234)
1e: CATH_1ridA03 (A:127-184)
1f: CATH_1ridB03 (B:127-184)
1g: CATH_1ridA01 (A:1-65)
1h: CATH_1ridB01 (B:1-65)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Vaccinia virus wr. Organism_taxid: 10254. Strain: wr.
(1)
1a
1ridA02
A:66-125
1b
1ridB02
B:66-125
1c
1ridA04
A:185-234
1d
1ridB04
B:185-234
1e
1ridA03
A:127-184
1f
1ridB03
B:127-184
1g
1ridA01
A:1-65
1h
1ridB01
B:1-65
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Sushi_1ridB01 (B:187-242)
1b: PFAM_Sushi_1ridB02 (B:187-242)
1c: PFAM_Sushi_1ridB03 (B:187-242)
1d: PFAM_Sushi_1ridB04 (B:187-242)
1e: PFAM_Sushi_1ridB05 (B:187-242)
1f: PFAM_Sushi_1ridB06 (B:187-242)
1g: PFAM_Sushi_1ridB07 (B:187-242)
1h: PFAM_Sushi_1ridB08 (B:187-242)
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Clans
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)
(
)
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)
(
)
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Vaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strain WR))
(5)
1a
Sushi-1ridB01
B:187-242
1b
Sushi-1ridB02
B:187-242
1c
Sushi-1ridB03
B:187-242
1d
Sushi-1ridB04
B:187-242
1e
Sushi-1ridB05
B:187-242
1f
Sushi-1ridB06
B:187-242
1g
Sushi-1ridB07
B:187-242
1h
Sushi-1ridB08
B:187-242
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Chain A
Asymmetric Unit 1
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