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1RDI
Asym. Unit
Info
Asym.Unit (49 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
MANNOSE-BINDING PROTEIN, SUBTILISIN DIGEST FRAGMENT COMPLEX WITH ALPHA-METHYL-L-FUCOPYRANOSIDE
Authors
:
K. K. -S. Ng, K. Drickamer, W. I. Weis
Date
:
05 Sep 95 (Deposition) - 08 Mar 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : 1,2
Biol. Unit 1: 1,2 (1x)
Keywords
:
C-Type Lectin, Calcium-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. K. Ng, K. Drickamer, W. I. Weis
Structural Analysis Of Monosaccharide Recognition By Rat Liver Mannose-Binding Protein.
J. Biol. Chem. V. 271 663 1996
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
3a: ALPHA-L-METHYL-FUCOSE (MFUa)
3b: ALPHA-L-METHYL-FUCOSE (MFUb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
MFU
2
Ligand/Ion
ALPHA-L-METHYL-FUCOSE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: CA1 (AUTHOR)
09: CA2 (AUTHOR)
10: CA3 (AUTHOR)
11: CA4 (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CA 1:2 , GLU 1:190 , ASN 1:192 , GLU 1:198 , ASN 1:210 , ASP 1:211 , HOH 1:356 , HOH 1:359
BINDING SITE FOR RESIDUE MFU 1 1
02
AC2
SOFTWARE
CA 2:2 , GLU 2:190 , ASN 2:192 , GLU 2:198 , ASN 2:210 , ASP 2:211 , HOH 2:378
BINDING SITE FOR RESIDUE MFU 2 1
03
AC3
SOFTWARE
ASP 1:166 , GLU 1:170 , ASN 1:193 , GLU 1:198 , ASN 1:199 , HOH 1:274
BINDING SITE FOR RESIDUE CA 1 227
04
AC4
SOFTWARE
MFU 1:1 , GLU 1:190 , ASN 1:192 , GLU 1:198 , ASN 1:210 , ASP 1:211
BINDING SITE FOR RESIDUE CA 1 2
05
AC5
SOFTWARE
ASN 1:199 , PRO 1:213 , CYS 1:214 , HOH 1:243 , HOH 1:342
BINDING SITE FOR RESIDUE CL 1 3
06
AC6
SOFTWARE
ASP 2:166 , GLU 2:170 , ASN 2:193 , GLU 2:198 , ASN 2:199 , HOH 2:232
BINDING SITE FOR RESIDUE CA 2 227
07
AC7
SOFTWARE
MFU 2:1 , GLU 2:190 , ASN 2:192 , GLU 2:198 , ASN 2:210 , ASP 2:211
BINDING SITE FOR RESIDUE CA 2 2
08
CA1
AUTHOR
CA 1:227 , ASP 1:166 , GLU 1:170 , ASN 1:193 , GLU 1:198 , ASN 1:199 , HOH 1:274
CALCIUM BINDING SITES
09
CA2
AUTHOR
CA 2:227 , ASP 2:166 , GLU 2:170 , ASN 2:193 , GLU 2:198 , ASN 2:199 , HOH 2:232
CALCIUM BINDING SITES
10
CA3
AUTHOR
CA 1:2 , GLU 1:190 , ASN 1:192 , GLU 1:198 , ASN 1:210 , ASP 1:211 , MFU 1:1
CALCIUM BINDING SITES
11
CA4
AUTHOR
CA 2:2 , GLU 2:190 , ASN 2:192 , GLU 2:198 , ASN 2:210 , ASP 2:211 , MFU 2:1
CALCIUM BINDING SITES
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (1:116-223,2:116-223)
2: C_TYPE_LECTIN_1 (1:200-222,2:200-222)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
MBL2_RAT
134-241
2
1:116-223
2:116-223
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
MBL2_RAT
218-240
2
1:200-222
2:200-222
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1rdi1_ (1:)
1b: SCOP_d1rdi2_ (2:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Mannose-binding protein A, C-lectin domain
(39)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(38)
1a
d1rdi1_
1:
1b
d1rdi2_
2:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1rdi200 (2:114-225)
1b: CATH_1rdi100 (1:115-225)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Black rat (Rattus rattus)
(8)
1a
1rdi200
2:114-225
1b
1rdi100
1:115-225
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lectin_C_1rdi201 (2:122-224)
1b: PFAM_Lectin_C_1rdi202 (2:122-224)
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Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Rattus norvegicus (Rat)
(33)
1a
Lectin_C-1rdi201
2:122-224
1b
Lectin_C-1rdi202
2:122-224
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Asymmetric Unit 1
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Asym.Unit (49 KB)
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