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1R9J
Asym. Unit
Info
Asym.Unit (227 KB)
Biol.Unit 1 (222 KB)
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(1)
Title
:
TRANSKETOLASE FROM LEISHMANIA MEXICANA
Authors
:
N. J. Veitch, D. A. Mauger, J. J. Cazzulo, Y. Lindqvist, M. P. Barrett
Date
:
30 Oct 03 (Deposition) - 09 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
3 Domains, Each Of The Alpha/Beta Type, Thiamine Diphosphate Binding Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. J. Veitch, D. A. Maugeri, J. J. Cazzulo, Y. Lindqvist, M. P. Barrett
Transketolase From Leishmania Mexicana Has A Dual Subcellular Localization.
Biochem. J. V. 382 759 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: THIAMINE DIPHOSPHATE (TPPa)
2b: THIAMINE DIPHOSPHATE (TPPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
TPP
2
Ligand/Ion
THIAMINE DIPHOSPHATE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:155 , ASN A:185 , ILE A:187 , TPP A:1671 , HOH A:1793
BINDING SITE FOR RESIDUE CA A 1670
2
AC2
SOFTWARE
ASP B:155 , ASN B:185 , ILE B:187 , TPP B:2671 , HOH B:2836
BINDING SITE FOR RESIDUE CA B 2670
3
AC3
SOFTWARE
THR A:29 , HIS A:66 , GLY A:114 , LEU A:116 , ASP A:155 , GLY A:156 , GLU A:160 , ASN A:185 , ILE A:187 , SER A:188 , ILE A:189 , ILE A:248 , HIS A:261 , CA A:1670 , HOH A:1743 , HOH A:1898 , ASP B:376 , GLU B:409 , PHE B:435 , TYR B:438 , HIS B:471
BINDING SITE FOR RESIDUE TPP A 1671
4
AC4
SOFTWARE
ASP A:376 , GLU A:409 , PHE A:435 , TYR A:438 , HIS A:471 , THR B:29 , HIS B:66 , GLY B:114 , LEU B:116 , ASP B:155 , GLY B:156 , GLU B:160 , ASN B:185 , ILE B:187 , ILE B:189 , ILE B:248 , HIS B:261 , CA B:2670 , HOH B:2695 , HOH B:2788
BINDING SITE FOR RESIDUE TPP B 2671
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1r9ja2 (A:1-336)
1b: SCOP_d1r9jb2 (B:1-336)
2a: SCOP_d1r9ja1 (A:337-526)
2b: SCOP_d1r9jb1 (B:337-526)
3a: SCOP_d1r9ja3 (A:527-669)
3b: SCOP_d1r9jb3 (B:527-669)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
TK-like PP module
(24)
Protein domain
:
Transketolase (TK), PP module
(13)
Leishmania mexicana mexicana [TaxId: 44270]
(1)
1a
d1r9ja2
A:1-336
1b
d1r9jb2
B:1-336
Family
:
TK-like Pyr module
(16)
Protein domain
:
Transketolase (TK), Pyr module
(10)
Leishmania mexicana mexicana [TaxId: 44270]
(1)
2a
d1r9ja1
A:337-526
2b
d1r9jb1
B:337-526
Fold
:
TK C-terminal domain-like
(79)
Superfamily
:
TK C-terminal domain-like
(79)
Family
:
Transketolase C-terminal domain-like
(21)
Protein domain
:
Transketolase (TK), C-domain
(13)
Leishmania mexicana mexicana [TaxId: 44270]
(1)
3a
d1r9ja3
A:527-669
3b
d1r9jb3
B:527-669
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1r9jA03 (A:535-669)
1b: CATH_1r9jB03 (B:535-669)
2a: CATH_1r9jA02 (A:334-534)
2b: CATH_1r9jB02 (B:334-534)
2c: CATH_1r9jA01 (A:0-333)
2d: CATH_1r9jB01 (B:-1-333)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.920, no name defined]
(73)
Leishmania mexicana mexicana. Organism_taxid: 44270. Strain: mexicana.
(1)
1a
1r9jA03
A:535-669
1b
1r9jB03
B:535-669
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Leishmania mexicana mexicana. Organism_taxid: 44270. Strain: mexicana.
(1)
2a
1r9jA02
A:334-534
2b
1r9jB02
B:334-534
2c
1r9jA01
A:0-333
2d
1r9jB01
B:-1-333
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Transket_pyr_1r9jB01 (B:348-524)
1b: PFAM_Transket_pyr_1r9jB02 (B:348-524)
2a: PFAM_Transketolase_N_1r9jB03 (B:3-336)
2b: PFAM_Transketolase_N_1r9jB04 (B:3-336)
3a: PFAM_Transketolase_C_1r9jB05 (B:536-645)
3b: PFAM_Transketolase_C_1r9jB06 (B:536-645)
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Clans
(
)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
THDP-binding
(106)
Family
:
Transket_pyr
(45)
Leishmania mexicana mexicana
(1)
1a
Transket_pyr-1r9jB01
B:348-524
1b
Transket_pyr-1r9jB02
B:348-524
Family
:
Transketolase_N
(22)
Leishmania mexicana mexicana
(1)
2a
Transketolase_N-1r9jB03
B:3-336
2b
Transketolase_N-1r9jB04
B:3-336
Clan
:
no clan defined [family: Transketolase_C]
(40)
Family
:
Transketolase_C
(40)
Leishmania mexicana mexicana
(1)
3a
Transketolase_C-1r9jB05
B:536-645
3b
Transketolase_C-1r9jB06
B:536-645
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Asym.Unit (227 KB)
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