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1QTE
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 70 KDA SOLUBLE LYTIC TRANSGLYCOSYLASE SLT70 FROM ESCHERICHIA COLI AT 1.90 A RESOLUTION IN COMPLEX WITH A 1,6-ANHYDROMUROTRIPEPTIDE
Authors
:
E. J. Van Asselt, A. -M. W. H. Thunnissen, B. W. Dijkstra
Date
:
27 Jun 99 (Deposition) - 31 Aug 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Superhelix, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. J. Van Asselt, A. M. Thunnissen, B. W. Dijkstra
High Resolution Crystal Structures Of The Escherichia Coli Lytic Transglycosylase Slt70 And Its Complex With A Peptidoglycan Fragment.
J. Mol. Biol. V. 291 877 1999
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Hetero Components
(7, 22)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIO... (AH0a)
3a: ALANINE (ALAa)
4a: D-ALANINE (DALa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
7g: SULFATE ION (SO4g)
7h: SULFATE ION (SO4h)
7i: SULFATE ION (SO4i)
7j: SULFATE ION (SO4j)
7k: SULFATE ION (SO4k)
7l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
AH0
1
Ligand/Ion
2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID
3
ALA
1
Mod. Amino Acid
ALANINE
4
DAL
1
Ligand/Ion
D-ALANINE
5
GOL
5
Ligand/Ion
GLYCEROL
6
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
12
Ligand/Ion
SULFATE ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:477 , GLU A:478 , VAL A:485 , SER A:487 , GLN A:496 , GLU A:583 , TYR A:587 , AH0 A:652 , HOH A:1050 , HOH A:1131 , HOH A:2211
BINDING SITE FOR RESIDUE NAG A 651
02
AC2
SOFTWARE
ARG A:349 , ARG A:448 , ALA A:593 , TYR A:597 , HOH A:1404 , HOH A:2215
BINDING SITE FOR RESIDUE SO4 A 701
03
AC3
SOFTWARE
ARG A:7 , ARG A:389 , HOH A:1672
BINDING SITE FOR RESIDUE SO4 A 702
04
AC4
SOFTWARE
SER A:284 , THR A:285 , SER A:286 , HOH A:1486
BINDING SITE FOR RESIDUE SO4 A 703
05
AC5
SOFTWARE
LEU A:396 , ASP A:397 , ASN A:398 , THR A:399 , LYS A:484 , HOH A:1453 , HOH A:1500 , HOH A:1741
BINDING SITE FOR RESIDUE SO4 A 704
06
AC6
SOFTWARE
TRP A:113 , SER A:118 , ARG A:616 , HOH A:1111 , HOH A:1139 , HOH A:1244 , HOH A:1263 , HOH A:1633 , HOH A:1837
BINDING SITE FOR RESIDUE SO4 A 705
07
AC7
SOFTWARE
ALA A:210 , GLN A:245 , HOH A:1349 , HOH A:1799 , HOH A:2114
BINDING SITE FOR RESIDUE SO4 A 706
08
AC8
SOFTWARE
PRO A:54 , ALA A:55 , ARG A:85 , HOH A:1063 , HOH A:1175 , HOH A:1693 , HOH A:1836
BINDING SITE FOR RESIDUE SO4 A 708
09
AC9
SOFTWARE
MET A:498 , PRO A:499 , GLY A:500 , HOH A:1475 , HOH A:1480 , HOH A:1537 , HOH A:1975
BINDING SITE FOR RESIDUE SO4 A 709
10
BC1
SOFTWARE
ASN A:247 , GLU A:248 , HOH A:1481
BINDING SITE FOR RESIDUE SO4 A 710
11
BC2
SOFTWARE
ARG A:302 , PRO A:467 , GLN A:468 , HOH A:1006 , HOH A:1365
BINDING SITE FOR RESIDUE SO4 A 711
12
BC3
SOFTWARE
ARG A:147 , PRO A:181 , ALA A:182
BINDING SITE FOR RESIDUE SO4 A 712
13
BC4
SOFTWARE
ARG A:162 , LYS A:166
BINDING SITE FOR RESIDUE SO4 A 713
14
BC5
SOFTWARE
TYR A:10 , LYS A:14 , TYR A:40 , LEU A:396 , GOL A:907 , HOH A:1122 , HOH A:1252
BINDING SITE FOR RESIDUE ACT A 801
15
BC6
SOFTWARE
AH0 A:652 , DAL A:654 , HOH A:2103
BINDING SITE FOR RESIDUE ALA A 653
16
BC7
SOFTWARE
ARG A:448 , ARG A:476 , AH0 A:652 , ALA A:653 , HOH A:1052 , HOH A:1663
BINDING SITE FOR RESIDUE DAL A 654
17
BC8
SOFTWARE
GLN A:477 , NAG A:651 , ALA A:653 , DAL A:654 , HOH A:1733 , HOH A:2024 , HOH A:2211
BINDING SITE FOR RESIDUE AH0 A 652
18
BC9
SOFTWARE
LEU A:158 , THR A:211 , THR A:214 , GLU A:317 , HOH A:1077 , HOH A:1151
BINDING SITE FOR RESIDUE GOL A 901
19
CC1
SOFTWARE
ARG A:359 , SER A:510 , PRO A:512 , ASP A:571 , ALA A:572 , TRP A:614 , HOH A:1047 , HOH A:1106 , HOH A:1126
BINDING SITE FOR RESIDUE GOL A 902
20
CC2
SOFTWARE
ARG A:301 , ASP A:327 , ASP A:571 , HOH A:1014 , HOH A:1026 , HOH A:1047 , HOH A:1572
BINDING SITE FOR RESIDUE GOL A 903
21
CC3
SOFTWARE
ARG A:545 , ARG A:599 , THR A:607 , MET A:609 , SER A:610 , HOH A:1081 , HOH A:1084 , HOH A:1136 , HOH A:1564 , HOH A:1867
BINDING SITE FOR RESIDUE GOL A 904
22
CC4
SOFTWARE
TYR A:10 , TYR A:40 , LEU A:41 , ARG A:44 , ACT A:801 , HOH A:1316 , HOH A:1611 , HOH A:2107
BINDING SITE FOR RESIDUE GOL A 907
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TRANSGLYCOSYLASE (A:474-502)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSGLYCOSYLASE
PS00922
Prokaryotic transglycosylases signature.
SLT_ECOLI
501-529
1
A:474-502
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1qtea1 (A:1-450)
2a: SCOP_d1qtea2 (A:451-618)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Bacterial muramidases
(3)
Family
:
Bacterial muramidases
(3)
Protein domain
:
70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1qtea1
A:1-450
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
Bacterial muramidase, catalytic domain
(11)
Protein domain
:
70 kDa soluble lytic transglycosylase, SLT70
(3)
Escherichia coli [TaxId: 562]
(3)
2a
d1qtea2
A:451-618
[
close SCOP info
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1qteA01 (A:1-363)
2a: CATH_1qteA03 (A:446-618)
3a: CATH_1qteA02 (A:376-445)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
70-kda Soluble Lytic Transglycosylase; domain 1
(3)
Homologous Superfamily
:
70-kda Soluble Lytic Transglycosylase, domain 1
(3)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1qteA01
A:1-363
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Escherichia coli. Organism_taxid: 562.
(8)
2a
1qteA03
A:446-618
Topology
:
Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1
(21)
Homologous Superfamily
:
[code=1.10.1240.20, no name defined]
(4)
Escherichia coli. Organism_taxid: 562.
(2)
3a
1qteA02
A:376-445
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SLT_1qteA01 (A:455-575)
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Organisms
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(
)
Clan
:
Lysozyme
(266)
Family
:
SLT
(6)
Escherichia coli (strain K12)
(4)
1a
SLT-1qteA01
A:455-575
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