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1QO1
Asym. Unit
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Asym.Unit (86 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
MOLECULAR ARCHITECTURE OF THE ROTARY MOTOR IN ATP SYNTHASE FROM YEAST MITOCHONDRIA
Authors
:
D. Stock, A. G. W. Leslie, J. E. Walker
Date
:
01 Nov 99 (Deposition) - 04 Nov 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,G,J,K,L,M,N,O,P,Q,R,S,T (1x)
Keywords
:
Atp Synthase, Low Resolution Model, C-Alpha Only
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Stock, A. G. W. Leslie, J. E. Walker
Molecular Architecture Of The Rotary Motor In Atp Synthase
Science V. 286 1700 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 17)
Info
All PROSITE Patterns/Profiles
1: ATPASE_C (K:40-61,L:40-61,M:40-61,N:40-61,O:...)
2: ATPASE_GAMMA (G:258-271)
3: ATPASE_ALPHA_BETA (D:346-355,E:346-355,F:346-355,A:36...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_C
PS00605
ATP synthase c subunit signature.
ATPL_YERPE
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
ATPL_PHOLL
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
ATPL_SHIFL
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
ATPL_ECOL6
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
ATPL_ECOLI
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
ATPL_ECO57
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
ATPL_SALTI
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
ATPL_SALTY
40-61
10
K:40-61
L:40-61
M:40-61
N:40-61
O:40-61
P:40-61
Q:40-61
R:40-61
S:40-61
T:40-61
2
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_BOVIN
283-296
1
G:258-271
3
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_BOVIN
396-405
3
D:346-355
E:346-355
F:346-355
ATPA_BOVIN
406-415
3
A:363-372
B:363-372
C:363-372
[
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]
Exons
(15, 33)
Info
All Exons
Exon 1.2 (D:9-63 | E:9-63 | F:9-63)
Exon 1.3 (D:63-121 | E:63-121 | F:63-121)
Exon 1.4 (D:121-162 | E:121-162 | F:121-162)
Exon 1.5 (D:162-223 | E:162-223 | F:162-223)
Exon 1.6 (D:224-276 | E:224-276 | F:224-276)
Exon 1.7 (D:277-317 | E:277-317 | F:277-317)
Exon 1.8 (D:318-388 | E:318-388 | F:318-388)
Exon 1.9 (D:389-456 | E:389-456 | F:389-456)
Exon 1.10 (D:456-475 | E:456-474 | F:456-474)
Exon 2.2 (G:1-6)
Exon 2.3 (G:6-44)
Exon 2.4 (G:77-90)
Exon 2.7 (G:209-240)
Exon 2.8 (G:240-272)
Exon 2.9 (G:272-272)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/-
11: Boundary 2.1/2.2
12: Boundary 2.2/2.3
13: Boundary 2.3/2.4
14: Boundary 2.4/2.5
15: Boundary 2.6/2.7
16: Boundary 2.7/2.8
17: Boundary 2.8/2.9
18: Boundary 2.9/2.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000017710
1
ENSBTAE00000144098
chr5:
61355655-61355808
154
ATPB_BOVIN
1-52
52
0
-
-
1.2
ENSBTAT00000017710
2
ENSBTAE00000144099
chr5:
61356274-61356456
183
ATPB_BOVIN
52-113
62
3
D:9-63
E:9-63
F:9-63
55
55
55
1.3
ENSBTAT00000017710
3
ENSBTAE00000144101
chr5:
61356699-61356873
175
ATPB_BOVIN
113-171
59
3
D:63-121
E:63-121
F:63-121
59
59
59
1.4
ENSBTAT00000017710
4
ENSBTAE00000144103
chr5:
61357390-61357511
122
ATPB_BOVIN
171-212
42
3
D:121-162
E:121-162
F:121-162
42
42
42
1.5
ENSBTAT00000017710
5
ENSBTAE00000144107
chr5:
61357757-61357941
185
ATPB_BOVIN
212-273
62
3
D:162-223
E:162-223
F:162-223
62
62
62
1.6
ENSBTAT00000017710
6
ENSBTAE00000144109
chr5:
61358444-61358602
159
ATPB_BOVIN
274-326
53
3
D:224-276
E:224-276
F:224-276
53
53
53
1.7
ENSBTAT00000017710
7
ENSBTAE00000144110
chr5:
61358693-61358815
123
ATPB_BOVIN
327-367
41
3
D:277-317
E:277-317
F:277-317
41
41
41
1.8
ENSBTAT00000017710
8
ENSBTAE00000144111
chr5:
61359431-61359643
213
ATPB_BOVIN
368-438
71
3
D:318-388
E:318-388
F:318-388
71
71
71
1.9
ENSBTAT00000017710
9
ENSBTAE00000144114
chr5:
61360024-61360225
202
ATPB_BOVIN
439-506
68
3
D:389-456
E:389-456
F:389-456
68
68
68
1.10
ENSBTAT00000017710
10
ENSBTAE00000297207
chr5:
61360774-61361036
263
ATPB_BOVIN
506-537
32
3
D:456-475
E:456-474
F:456-474
20
19
19
2.1
ENSBTAT00000018505
1
ENSBTAE00000150694
chr13:
14893326-14893240
87
ATPG_BOVIN
1-19
19
0
-
-
2.2
ENSBTAT00000018505
2
ENSBTAE00000150697
chr13:
14886562-14886528
35
ATPG_BOVIN
19-31
13
1
G:1-6
6
2.3
ENSBTAT00000018505
3
ENSBTAE00000150700
chr13:
14886029-14885898
132
ATPG_BOVIN
31-75
45
1
G:6-44
39
2.4
ENSBTAT00000018505
4
ENSBTAE00000150704
chr13:
14882864-14882660
205
ATPG_BOVIN
75-143
69
1
G:77-90
14
2.5
ENSBTAT00000018505
5
ENSBTAE00000150705
chr13:
14882083-14881940
144
ATPG_BOVIN
143-191
49
0
-
-
2.6
ENSBTAT00000018505
6
ENSBTAE00000150706
chr13:
14881819-14881755
65
ATPG_BOVIN
191-213
23
0
-
-
2.7
ENSBTAT00000018505
7
ENSBTAE00000150707
chr13:
14880753-14880598
156
ATPG_BOVIN
213-265
53
1
G:209-240
32
2.8
ENSBTAT00000018505
8
ENSBTAE00000150708
chr13:
14880202-14880106
97
ATPG_BOVIN
265-297
33
1
G:240-272
33
2.9
ENSBTAT00000018505
9
ENSBTAE00000305670
chr13:
14877783-14877747
37
ATPG_BOVIN
297-298
2
1
G:272-272
1
2.10
ENSBTAT00000018505
10
ENSBTAE00000305668
chr13:
14877118-14876979
140
ATPG_BOVIN
-
0
0
-
-
[
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SCOP Domains
(1, 18)
Info
All SCOP Domains
1a: SCOP_d1qo1a_ (A:)
1b: SCOP_d1qo1b_ (B:)
1c: SCOP_d1qo1m_ (M:)
1d: SCOP_d1qo1n_ (N:)
1e: SCOP_d1qo1o_ (O:)
1f: SCOP_d1qo1p_ (P:)
1g: SCOP_d1qo1q_ (Q:)
1h: SCOP_d1qo1r_ (R:)
1i: SCOP_d1qo1s_ (S:)
1j: SCOP_d1qo1t_ (T:)
1k: SCOP_d1qo1c_ (C:)
1l: SCOP_d1qo1d_ (D:)
1m: SCOP_d1qo1e_ (E:)
1n: SCOP_d1qo1f_ (F:)
1o: SCOP_d1qo1g_ (G:)
1p: SCOP_d1qo1j_ (J:)
1q: SCOP_d1qo1k_ (K:)
1r: SCOP_d1qo1l_ (L:)
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Protein Domains
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Organisms
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)
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Class
:
Low resolution protein structures
(283)
Fold
:
ATP synthase
(3)
Superfamily
:
ATP synthase
(3)
Family
:
ATP synthase
(3)
Protein domain
:
ATP synthase
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1qo1a_
A:
1b
d1qo1b_
B:
1c
d1qo1m_
M:
1d
d1qo1n_
N:
1e
d1qo1o_
O:
1f
d1qo1p_
P:
1g
d1qo1q_
Q:
1h
d1qo1r_
R:
1i
d1qo1s_
S:
1j
d1qo1t_
T:
1k
d1qo1c_
C:
1l
d1qo1d_
D:
1m
d1qo1e_
E:
1n
d1qo1f_
F:
1o
d1qo1g_
G:
1p
d1qo1j_
J:
1q
d1qo1k_
K:
1r
d1qo1l_
L:
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