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1QHJ
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
X-RAY STRUCTURE OF BACTERIORHODOPSIN GROWN IN LIPIDIC CUBIC PHASES
Authors
:
H. Belrhali, P. Nollert, A. Royant, C. Menzel, J. P. Rosenbusch, E. M. La E. Pebay-Peyroula
Date
:
04 May 99 (Deposition) - 21 Jul 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Photoreceptor, Proton Pump, Membrane Protein, Retinal Protein, Lipidic Cubic Phases, Purple Membrane, Archeal Lipids
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Belrhali, P. Nollert, A. Royant, C. Menzel, J. P. Rosenbusch, E. M. Landau, E. Pebay-Peyroula
Protein, Lipid And Water Organization In Bacteriorhodopsin Crystals: A Molecular View Of The Purple Membrane At 1. 9 A Resolution.
Structure Fold. Des. V. 7 909 1999
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1a)
1b: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1b)
1c: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1c)
1d: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1d)
1e: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1e)
1f: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1f)
1g: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1g)
1h: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1h)
1i: 1,2-[DI-2,6,10,14-TETRAMETHYL-HEXA... (PH1i)
2a: RETINAL (RETa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PH1
9
Ligand/Ion
1,2-[DI-2,6,10,14-TETRAMETHYL-HEXADECAN-16-OXY]-PROPANE
2
RET
1
Ligand/Ion
RETINAL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: SFF (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:86 , THR A:90 , MET A:118 , TRP A:138 , SER A:141 , THR A:142 , TRP A:182 , TYR A:185 , PRO A:186 , TRP A:189 , ASP A:212 , ALA A:215 , LYS A:216
BINDING SITE FOR RESIDUE RET A 300
02
AC2
SOFTWARE
LEU A:48 , ILE A:52 , MET A:56 , TYR A:64 , TRP A:80 , LEU A:87 , PHE A:88 , LEU A:92 , GLY A:116 , ILE A:117 , LEU A:123 , VAL A:124 , LEU A:127
BINDING SITE FOR RESIDUE PH1 A 500
03
AC3
SOFTWARE
ALA A:14 , THR A:17 , ALA A:18 , GLY A:21 , THR A:24 , LEU A:25 , PHE A:54 , LEU A:58 , TYR A:133 , ALA A:139 , ILE A:140 , PH1 A:504 , PH1 A:506
BINDING SITE FOR RESIDUE PH1 A 501
04
AC4
SOFTWARE
TRP A:12 , LEU A:15 , TYR A:131 , PHE A:135 , TRP A:138 , ALA A:139 , ALA A:196 , PRO A:200 , ASN A:202 , ILE A:203 , LEU A:206 , MET A:209 , VAL A:210 , PH1 A:503
BINDING SITE FOR RESIDUE PH1 A 502
05
AC5
SOFTWARE
VAL A:187 , ILE A:191 , ALA A:196 , ILE A:198 , VAL A:199 , PRO A:200 , LEU A:207 , VAL A:210 , LEU A:211 , PH1 A:502 , PH1 A:505 , PH1 A:508
BINDING SITE FOR RESIDUE PH1 A 503
06
AC6
SOFTWARE
TRP A:10 , ILE A:11 , ALA A:14 , LEU A:15 , LEU A:22 , PH1 A:501 , PH1 A:508
BINDING SITE FOR RESIDUE PH1 A 504
07
AC7
SOFTWARE
LYS A:172 , ARG A:175 , ASN A:176 , VAL A:179 , VAL A:180 , SER A:183 , VAL A:187 , PH1 A:503 , PH1 A:507
BINDING SITE FOR RESIDUE PH1 A 505
08
AC8
SOFTWARE
LEU A:28 , LYS A:40 , TYR A:43 , ALA A:44 , THR A:47 , LEU A:48 , THR A:107 , ALA A:110 , ILE A:117 , ILE A:140 , ALA A:144 , TYR A:147 , TYR A:150 , PH1 A:501
BINDING SITE FOR RESIDUE PH1 A 506
09
AC9
SOFTWARE
MET A:145 , LEU A:146 , LEU A:149 , TYR A:150 , PHE A:153 , PHE A:154 , LYS A:172 , VAL A:173 , ASN A:176 , VAL A:177 , VAL A:180 , SER A:183 , PH1 A:505 , PH1 A:508
BINDING SITE FOR RESIDUE PH1 A 507
10
BC1
SOFTWARE
LEU A:19 , TYR A:26 , MET A:32 , LEU A:146 , VAL A:210 , VAL A:213 , SER A:214 , VAL A:217 , GLY A:218 , LEU A:221 , ARG A:225 , PH1 A:503 , PH1 A:504 , PH1 A:507
BINDING SITE FOR RESIDUE PH1 A 508
11
SFF
AUTHOR
LYS A:216
SCHIFF BASE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BACTERIAL_OPSIN_1 (A:82-94)
2: BACTERIAL_OPSIN_RET (A:208-219)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BACTERIAL_OPSIN_1
PS00950
Bacterial rhodopsins signature 1.
BACR_HALSA
95-107
1
A:82-94
2
BACTERIAL_OPSIN_RET
PS00327
Bacterial rhodopsins retinal binding site.
BACR_HALSA
221-232
1
A:208-219
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1qhja_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Family A G protein-coupled receptor-like
(138)
Superfamily
:
Family A G protein-coupled receptor-like
(138)
Family
:
Bacteriorhodopsin-like
(107)
Protein domain
:
Bacteriorhodopsin
(61)
Halobacterium salinarum [TaxId: 2242]
(58)
1a
d1qhja_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1qhjA00 (A:5-232)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Homologous Superfamily
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Halobacterium salinarum. Organism_taxid: 2242. Strain: s9.
(2)
1a
1qhjA00
A:5-232
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Bac_rhodopsin_1qhjA01 (A:10-232)
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(
)
Clan
:
GPCR_A
(90)
Family
:
Bac_rhodopsin
(43)
Halobacterium salinarium (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
(40)
1a
Bac_rhodopsin-1qhjA01
A:10-232
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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