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1Q5R
Asym. Unit
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Asym.Unit (513 KB)
Biol.Unit 1 (503 KB)
Biol.Unit 2 (999 KB)
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(1)
Title
:
THE RHODOCOCCUS 20S PROTEASOME WITH UNPROCESSED PRO-PEPTIDES
Authors
:
Y. D. Kwon, I. Nagy, P. D. Adams, W. Baumeister, B. K. Jap
Date
:
08 Aug 03 (Deposition) - 16 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Biol. Unit 2: A,B,C,D,E,F,G,H,I,J,K,L,M,N (2x)
Keywords
:
Proteasome Assembly, Pro-Peptide, Inter-Subunit Contacts, Rhodococcus Erythropolis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. D. Kwon, I. Nagy, P. D. Adams, W. Baumeister, B. K. Jap
Crystal Structures Of The Rhodococcus Proteasome With And Without Its Pro-Peptides: Implications For The Role Of The Pro-Peptide In Proteasome Assembly.
J. Mol. Biol. V. 335 233 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: PROTEASOME_ALPHA_2 (A:16-232,B:16-232,C:16-232,D:16-23...)
2: PROTEASOME_BETA_2 (H:-1-190,I:-1-190,J:-1-190,K:-1-19...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEASOME_ALPHA_2
PS51475
Proteasome alpha-type subunit profile.
PSA1_RHOER
16-232
7
A:16-232
B:16-232
C:16-232
D:16-232
E:16-232
F:16-232
G:16-232
2
PROTEASOME_BETA_2
PS51476
Proteasome beta-type subunit profile.
PSB1_RHOER
65-255
7
H:-1-190
I:-1-190
J:-1-190
K:-1-190
L:-1-190
M:-1-190
N:-1-190
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 14)
Info
All SCOP Domains
1a: SCOP_d1q5ra_ (A:)
1b: SCOP_d1q5rd_ (D:)
1c: SCOP_d1q5re_ (E:)
1d: SCOP_d1q5rf_ (F:)
1e: SCOP_d1q5rg_ (G:)
1f: SCOP_d1q5rb_ (B:)
1g: SCOP_d1q5rc_ (C:)
2a: SCOP_d1q5rh_ (H:)
2b: SCOP_d1q5rk_ (K:)
2c: SCOP_d1q5rl_ (L:)
2d: SCOP_d1q5rm_ (M:)
2e: SCOP_d1q5rn_ (N:)
2f: SCOP_d1q5ri_ (I:)
2g: SCOP_d1q5rj_ (J:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Proteasome subunits
(222)
Protein domain
:
Proteasome alpha subunit (non-catalytic)
(66)
Rhodococcus erythropolis [TaxId: 1833]
(3)
1a
d1q5ra_
A:
1b
d1q5rd_
D:
1c
d1q5re_
E:
1d
d1q5rf_
F:
1e
d1q5rg_
G:
1f
d1q5rb_
B:
1g
d1q5rc_
C:
Protein domain
:
Proteasome beta subunit (catalytic)
(61)
Rhodococcus erythropolis [TaxId: 1833]
(3)
2a
d1q5rh_
H:
2b
d1q5rk_
K:
2c
d1q5rl_
L:
2d
d1q5rm_
M:
2e
d1q5rn_
N:
2f
d1q5ri_
I:
2g
d1q5rj_
J:
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CATH Domains
(1, 14)
Info
all CATH domains
1a: CATH_1q5rA00 (A:9-235)
1b: CATH_1q5rD00 (D:9-235)
1c: CATH_1q5rE00 (E:9-235)
1d: CATH_1q5rF00 (F:9-235)
1e: CATH_1q5rG00 (G:9-235)
1f: CATH_1q5rH00 (H:-49-219)
1g: CATH_1q5rI00 (I:-49-219)
1h: CATH_1q5rJ00 (J:-49-219)
1i: CATH_1q5rK00 (K:-49-219)
1j: CATH_1q5rL00 (L:-49-219)
1k: CATH_1q5rM00 (M:-49-219)
1l: CATH_1q5rN00 (N:-49-219)
1m: CATH_1q5rB00 (B:9-235)
1n: CATH_1q5rC00 (C:9-235)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Rhodococcus erythropolis. Organism_taxid: 1833. Strain: bl21.
(2)
1a
1q5rA00
A:9-235
1b
1q5rD00
D:9-235
1c
1q5rE00
E:9-235
1d
1q5rF00
F:9-235
1e
1q5rG00
G:9-235
1f
1q5rH00
H:-49-219
1g
1q5rI00
I:-49-219
1h
1q5rJ00
J:-49-219
1i
1q5rK00
K:-49-219
1j
1q5rL00
L:-49-219
1k
1q5rM00
M:-49-219
1l
1q5rN00
N:-49-219
1m
1q5rB00
B:9-235
1n
1q5rC00
C:9-235
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Pfam Domains
(1, 14)
Info
all PFAM domains
1a: PFAM_Proteasome_1q5rG01 (G:24-209)
1b: PFAM_Proteasome_1q5rG02 (G:24-209)
1c: PFAM_Proteasome_1q5rG03 (G:24-209)
1d: PFAM_Proteasome_1q5rG04 (G:24-209)
1e: PFAM_Proteasome_1q5rG05 (G:24-209)
1f: PFAM_Proteasome_1q5rG06 (G:24-209)
1g: PFAM_Proteasome_1q5rG07 (G:24-209)
1h: PFAM_Proteasome_1q5rN01 (N:-4-185)
1i: PFAM_Proteasome_1q5rN02 (N:-4-185)
1j: PFAM_Proteasome_1q5rN03 (N:-4-185)
1k: PFAM_Proteasome_1q5rN04 (N:-4-185)
1l: PFAM_Proteasome_1q5rN05 (N:-4-185)
1m: PFAM_Proteasome_1q5rN06 (N:-4-185)
1n: PFAM_Proteasome_1q5rN07 (N:-4-185)
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Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Rhodococcus erythropolis (Arthrobacter picolinophilus)
(2)
1a
Proteasome-1q5rG01
G:24-209
1b
Proteasome-1q5rG02
G:24-209
1c
Proteasome-1q5rG03
G:24-209
1d
Proteasome-1q5rG04
G:24-209
1e
Proteasome-1q5rG05
G:24-209
1f
Proteasome-1q5rG06
G:24-209
1g
Proteasome-1q5rG07
G:24-209
1h
Proteasome-1q5rN01
N:-4-185
1i
Proteasome-1q5rN02
N:-4-185
1j
Proteasome-1q5rN03
N:-4-185
1k
Proteasome-1q5rN04
N:-4-185
1l
Proteasome-1q5rN05
N:-4-185
1m
Proteasome-1q5rN06
N:-4-185
1n
Proteasome-1q5rN07
N:-4-185
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Asym.Unit (513 KB)
Header - Asym.Unit
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