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1Q5A
Asym. Unit
Info
Asym.Unit (186 KB)
Biol.Unit 1 (168 KB)
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(1)
Title
:
S-SHAPED TRANS INTERACTIONS OF CADHERINS MODEL BASED ON FITTING C-CADHERIN (1L3W) TO 3D MAP OF DESMOSOMES OBTAINED BY ELECTRON TOMOGRAPHY
Authors
:
W. He, P. Cowin, D. L. Stokes
Date
:
06 Aug 03 (Deposition) - 07 Oct 03 (Release) - 13 Jul 11 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
30.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cadherin; Trans Interaction; Desmosome; Junction; Adhesion, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. He, P. Cowin, D. L. Stokes
Untangling Desmosomal Knots With Electron Tomography
Science V. 302 109 2003
[
close entry info
]
Hetero Components
(3, 54)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
3d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
3e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
3f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
3g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
3h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
24
Ligand/Ion
CALCIUM ION
2
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
8
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(54, 54)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:154 , PRO A:155 , GLU A:186 , TYR A:187 , THR A:188
BINDING SITE FOR RESIDUE NAG A 801
02
AC2
SOFTWARE
ASP A:222 , THR A:245
BINDING SITE FOR RESIDUE NAG A 802
03
AC3
SOFTWARE
GLN A:256 , VAL A:258 , TYR A:259 , ILE A:271 , THR A:272 , THR A:273
BINDING SITE FOR RESIDUE NAG A 803
04
AC4
SOFTWARE
PHE A:308 , LEU A:312 , THR A:314
BINDING SITE FOR RESIDUE NDG A 804
05
AC5
SOFTWARE
THR A:301 , THR A:314 , THR A:316 , NAG A:806
BINDING SITE FOR RESIDUE NAG A 805
06
AC6
SOFTWARE
LYS A:224 , THR A:225 , GLN A:299 , THR A:316 , THR A:318 , NAG A:805
BINDING SITE FOR RESIDUE NAG A 806
07
AC7
SOFTWARE
THR A:227 , VAL A:297 , THR A:320
BINDING SITE FOR RESIDUE NAG A 807
08
AC8
SOFTWARE
LYS A:402 , TYR A:406 , THR A:407
BINDING SITE FOR RESIDUE NAG A 808
09
AC9
SOFTWARE
LEU A:411 , VAL A:419 , GLY A:420 , THR A:421 , NAG A:810
BINDING SITE FOR RESIDUE NAG A 809
10
BC1
SOFTWARE
THR A:421 , THR A:423 , NAG A:809 , NDG A:811
BINDING SITE FOR RESIDUE NAG A 810
11
BC2
SOFTWARE
ALA A:335 , ILE A:409 , THR A:425 , NAG A:810
BINDING SITE FOR RESIDUE NDG A 811
12
BC3
SOFTWARE
TYR A:226 , THR A:227 , ALA A:228 , GLN A:240
BINDING SITE FOR RESIDUE NAG A 812
13
BC4
SOFTWARE
ASN A:403
BINDING SITE FOR RESIDUE NDG A 902
14
BC5
SOFTWARE
ASN A:270
BINDING SITE FOR RESIDUE NDG A 903
15
BC6
SOFTWARE
VAL A:524 , ASN A:526
BINDING SITE FOR RESIDUE NAG A 904
16
BC7
SOFTWARE
ASP B:154 , PRO B:155 , GLU B:186 , TYR B:187 , THR B:188
BINDING SITE FOR RESIDUE NAG B 801
17
BC8
SOFTWARE
ASP B:222 , THR B:245
BINDING SITE FOR RESIDUE NAG B 802
18
BC9
SOFTWARE
GLN B:256 , VAL B:258 , TYR B:259 , ILE B:271 , THR B:272 , THR B:273
BINDING SITE FOR RESIDUE NAG B 803
19
CC1
SOFTWARE
PHE B:308 , LEU B:312 , THR B:314
BINDING SITE FOR RESIDUE NDG B 804
20
CC2
SOFTWARE
THR B:301 , THR B:314 , THR B:316 , NAG B:806
BINDING SITE FOR RESIDUE NAG B 805
21
CC3
SOFTWARE
LYS B:224 , THR B:225 , GLN B:299 , THR B:316 , THR B:318 , NAG B:805
BINDING SITE FOR RESIDUE NAG B 806
22
CC4
SOFTWARE
THR B:227 , VAL B:297 , THR B:320
BINDING SITE FOR RESIDUE NAG B 807
23
CC5
SOFTWARE
LYS B:402 , TYR B:406 , THR B:407
BINDING SITE FOR RESIDUE NAG B 808
24
CC6
SOFTWARE
LEU B:411 , VAL B:419 , GLY B:420 , THR B:421 , NAG B:810
BINDING SITE FOR RESIDUE NAG B 809
25
CC7
SOFTWARE
THR B:421 , THR B:423 , NAG B:809 , NDG B:811
BINDING SITE FOR RESIDUE NAG B 810
26
CC8
SOFTWARE
ALA B:335 , ILE B:409 , THR B:425 , NAG B:810
BINDING SITE FOR RESIDUE NDG B 811
27
CC9
SOFTWARE
TYR B:226 , THR B:227 , ALA B:228 , GLN B:240
BINDING SITE FOR RESIDUE NAG B 812
28
DC1
SOFTWARE
ASN B:403
BINDING SITE FOR RESIDUE NDG B 902
29
DC2
SOFTWARE
ASN B:270
BINDING SITE FOR RESIDUE NDG B 903
30
DC3
SOFTWARE
VAL B:524 , ASN B:526
BINDING SITE FOR RESIDUE NAG B 904
31
DC4
SOFTWARE
ASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , ASN A:143 , ASP A:195
BINDING SITE FOR RESIDUE CA A 905
32
DC5
SOFTWARE
GLU A:11 , GLU A:69 , ASP A:100 , GLN A:101 , ASP A:103 , ASP A:136
BINDING SITE FOR RESIDUE CA A 906
33
DC6
SOFTWARE
GLU A:11 , ASN A:12 , ASP A:67 , GLU A:69 , ASP A:103
BINDING SITE FOR RESIDUE CA A 907
34
DC7
SOFTWARE
GLU A:119 , GLU A:182 , ASP A:213 , ALA A:214 , ASP A:216 , ASP A:248
BINDING SITE FOR RESIDUE CA A 908
35
DC8
SOFTWARE
GLU A:119 , ASP A:180 , GLU A:182 , ASP A:216
BINDING SITE FOR RESIDUE CA A 909
36
DC9
SOFTWARE
ASN A:215 , ASN A:217 , ASP A:246 , ASP A:248 , ALA A:254 , ASN A:304
BINDING SITE FOR RESIDUE CA A 910
37
EC1
SOFTWARE
GLU A:232 , ASP A:289 , GLU A:291 , GLU A:328 , CA A:915
BINDING SITE FOR RESIDUE CA A 911
38
EC2
SOFTWARE
ASN A:327 , GLU A:328 , ASP A:358 , ASP A:360 , GLN A:365 , ASP A:414
BINDING SITE FOR RESIDUE CA A 912
39
EC3
SOFTWARE
GLU A:343 , ASP A:395 , GLU A:397 , ASP A:435 , CA A:916
BINDING SITE FOR RESIDUE CA A 913
40
EC4
SOFTWARE
ASN A:434 , ASN A:436 , ASP A:461 , ASP A:463 , ASN A:467 , ASP A:515
BINDING SITE FOR RESIDUE CA A 914
41
EC5
SOFTWARE
GLU A:232 , GLU A:291 , ASP A:325 , VAL A:326 , GLU A:328 , ASP A:360 , CA A:911
BINDING SITE FOR RESIDUE CA A 915
42
EC6
SOFTWARE
GLU A:343 , GLU A:397 , ASP A:432 , VAL A:433 , ASP A:435 , ASP A:463 , CA A:913
BINDING SITE FOR RESIDUE CA A 916
43
EC7
SOFTWARE
ASN B:102 , ASN B:104 , ASP B:134 , ASP B:136 , ASN B:143 , ASP B:195
BINDING SITE FOR RESIDUE CA B 905
44
EC8
SOFTWARE
GLU B:11 , GLU B:69 , ASP B:100 , GLN B:101 , ASP B:103 , ASP B:136
BINDING SITE FOR RESIDUE CA B 906
45
EC9
SOFTWARE
GLU B:11 , ASN B:12 , ASP B:67 , GLU B:69 , ASP B:103
BINDING SITE FOR RESIDUE CA B 907
46
FC1
SOFTWARE
GLU B:119 , GLU B:182 , ASP B:213 , ALA B:214 , ASP B:216 , ASP B:248
BINDING SITE FOR RESIDUE CA B 908
47
FC2
SOFTWARE
GLU B:119 , ASP B:180 , GLU B:182 , ASP B:216
BINDING SITE FOR RESIDUE CA B 909
48
FC3
SOFTWARE
ASN B:215 , ASN B:217 , ASP B:246 , ASP B:248 , ALA B:254 , ASN B:304
BINDING SITE FOR RESIDUE CA B 910
49
FC4
SOFTWARE
GLU B:232 , ASP B:289 , GLU B:291 , GLU B:328 , CA B:915
BINDING SITE FOR RESIDUE CA B 911
50
FC5
SOFTWARE
ASN B:327 , GLU B:328 , ASP B:358 , ASP B:360 , GLN B:365 , ASP B:414
BINDING SITE FOR RESIDUE CA B 912
51
FC6
SOFTWARE
GLU B:343 , ASP B:395 , GLU B:397 , ASP B:435 , CA B:916
BINDING SITE FOR RESIDUE CA B 913
52
FC7
SOFTWARE
ASN B:434 , ASN B:436 , ASP B:461 , ASP B:463 , ASN B:467 , ASP B:515
BINDING SITE FOR RESIDUE CA B 914
53
FC8
SOFTWARE
GLU B:232 , GLU B:291 , ASP B:325 , VAL B:326 , GLU B:328 , ASP B:360 , CA B:911
BINDING SITE FOR RESIDUE CA B 915
54
FC9
SOFTWARE
GLU B:343 , GLU B:397 , ASP B:432 , VAL B:433 , ASP B:435 , ASP B:463 , CA B:913
BINDING SITE FOR RESIDUE CA B 916
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1q5aa_ (A:)
1b: SCOP_d1q5ab_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Low resolution protein structures
(283)
Fold
:
Ep-cadherin
(4)
Superfamily
:
Ep-cadherin
(4)
Family
:
Ep-cadherin
(4)
Protein domain
:
Ep-cadherin
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d1q5aa_
A:
1b
d1q5ab_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
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all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Protein & NOT PROSITE
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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