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1PDW
Asym. Unit
Info
Asym.Unit (249 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (65 KB)
Biol.Unit 4 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DJ-1, P 1 21 1 SPACE GROUP
Authors
:
X. Tao, L. Tong
Date
:
20 May 03 (Deposition) - 24 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Dj-1, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Tao, L. Tong
Crystal Structure Of Human Dj-1, A Protein Associated With Early Onset Parkinson'S Disease.
J. Biol. Chem. V. 278 31372 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 32)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
32
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(10, 80)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_020492 (M3226I, chain A/B/C/D/E/F/G/H, )
02: VAR_072589 (A3239S, chain A/B/C/D/E/F/G/H, )
03: VAR_020493 (E3264D, chain A/B/C/D/E/F/G/H, )
04: VAR_020494 (R3298Q, chain A/B/C/D/E/F/G/H, )
05: VAR_020495 (A3304T, chain A/B/C/D/E/F/G/H, )
06: VAR_020496 (D3349A, chain A/B/C/D/E/F/G/H, )
07: VAR_020497 (G3350S, chain A/B/C/D/E/F/G/H, )
08: VAR_034801 (E3363K, chain A/B/C/D/E/F/G/H, )
09: VAR_020498 (L3366P, chain A/B/C/D/E/F/G/H, )
10: VAR_020499 (A3371S, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020492
M
26
I
PARK7_HUMAN
Disease (PARK7)
---
A
B
C
D
E
F
G
H
M
26
226
1026
1226
2026
2226
3026
3226
I
02
UniProt
VAR_072589
A
39
S
PARK7_HUMAN
Disease
---
A
B
C
D
E
F
G
H
A
39
239
1039
1239
2039
2239
3039
3239
S
03
UniProt
VAR_020493
E
64
D
PARK7_HUMAN
Disease (PARK7)
---
A
B
C
D
E
F
G
H
E
64
264
1064
1264
2064
2264
3064
3264
D
04
UniProt
VAR_020494
R
98
Q
PARK7_HUMAN
Polymorphism
71653619
A
B
C
D
E
F
G
H
R
98
298
1098
1298
2098
2298
3098
3298
Q
05
UniProt
VAR_020495
A
104
T
PARK7_HUMAN
Disease (PARK7)
---
A
B
C
D
E
F
G
H
A
104
304
1104
1304
2104
2304
3104
3304
T
06
UniProt
VAR_020496
D
149
A
PARK7_HUMAN
Disease (PARK7)
74315352
A
B
C
D
E
F
G
H
D
149
349
1149
1349
2149
2349
3149
3349
A
07
UniProt
VAR_020497
G
150
S
PARK7_HUMAN
Polymorphism
---
A
B
C
D
E
F
G
H
G
150
350
1150
1350
2150
2350
3150
3350
S
08
UniProt
VAR_034801
E
163
K
PARK7_HUMAN
Polymorphism
---
A
B
C
D
E
F
G
H
E
163
363
1163
1363
2163
2363
3163
3363
K
09
UniProt
VAR_020498
L
166
P
PARK7_HUMAN
Disease (PARK7)
28938172
A
B
C
D
E
F
G
H
L
166
366
1166
1366
2166
2366
3166
3366
P
10
UniProt
VAR_020499
A
171
S
PARK7_HUMAN
Polymorphism
---
A
B
C
D
E
F
G
H
A
171
371
1171
1371
2171
2371
3171
3371
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(6, 48)
Info
All Exons
Exon 1.4a (A:2-30 | B:202-230 | C:1002-1030 |...)
Exon 1.5a (A:31-64 | B:231-264 | C:1031-1064 ...)
Exon 1.7 (A:65-84 | B:265-284 | C:1065-1084 ...)
Exon 1.8a (A:85-108 | B:285-308 | C:1085-1108...)
Exon 1.10 (A:108-137 | B:308-337 | C:1108-113...)
Exon 1.11d (A:137-188 | B:337-388 | C:1137-118...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3a/1.4a
2: Boundary 1.4a/1.5a
3: Boundary 1.5a/1.7
4: Boundary 1.7/1.8a
5: Boundary 1.8a/1.10
6: Boundary 1.10/1.11d
7: Boundary 1.11d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000377491
3a
ENSE00001474095
chr1:
8021954-8022141
188
PARK7_HUMAN
-
0
0
-
-
1.4a
ENST00000377491
4a
ENSE00002182513
chr1:
8022823-8022935
113
PARK7_HUMAN
1-30
30
8
A:2-30
B:202-230
C:1002-1030
D:1202-1230
E:2002-2030
F:2202-2230
G:3002-3030
H:3202-3230
29
29
29
29
29
29
29
29
1.5a
ENST00000377491
5a
ENSE00000737026
chr1:
8025384-8025485
102
PARK7_HUMAN
31-64
34
8
A:31-64
B:231-264
C:1031-1064
D:1231-1264
E:2031-2064
F:2231-2264
G:3031-3064
H:3231-3264
34
34
34
34
34
34
34
34
1.7
ENST00000377491
7
ENSE00000737024
chr1:
8029405-8029464
60
PARK7_HUMAN
65-84
20
8
A:65-84
B:265-284
C:1065-1084
D:1265-1284
E:2065-2084
F:2265-2284
G:3065-3084
H:3265-3284
20
20
20
20
20
20
20
20
1.8a
ENST00000377491
8a
ENSE00000737022
chr1:
8030954-8031023
70
PARK7_HUMAN
85-108
24
8
A:85-108
B:285-308
C:1085-1108
D:1285-1308
E:2085-2108
F:2285-2308
G:3085-3108
H:3285-3308
24
24
24
24
24
24
24
24
1.10
ENST00000377491
10
ENSE00000737020
chr1:
8037712-8037798
87
PARK7_HUMAN
108-137
30
8
A:108-137
B:308-337
C:1108-1137
D:1308-1337
E:2108-2137
F:2308-2337
G:3108-3137
H:3308-3337
30
30
30
30
30
30
30
30
1.11d
ENST00000377491
11d
ENSE00001474089
chr1:
8044954-8045310
357
PARK7_HUMAN
137-189
53
8
A:137-188
B:337-388
C:1137-1188
D:1337-1388
E:2137-2189
F:2337-2388
G:3137-3189
H:3337-3388
52
52
52
52
53
52
53
52
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1pdwa_ (A:)
1b: SCOP_d1pdwb_ (B:)
1c: SCOP_d1pdwc_ (C:)
1d: SCOP_d1pdwd_ (D:)
1e: SCOP_d1pdwe_ (E:)
1f: SCOP_d1pdwf_ (F:)
1g: SCOP_d1pdwg_ (G:)
1h: SCOP_d1pdwh_ (H:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
DJ-1/PfpI
(54)
Protein domain
:
DJ-1
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d1pdwa_
A:
1b
d1pdwb_
B:
1c
d1pdwc_
C:
1d
d1pdwd_
D:
1e
d1pdwe_
E:
1f
d1pdwf_
F:
1g
d1pdwg_
G:
1h
d1pdwh_
H:
[
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]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1pdwG00 (G:3002-3192)
1b: CATH_1pdwE00 (E:2002-2190)
1c: CATH_1pdwA00 (A:2-188)
1d: CATH_1pdwB00 (B:202-388)
1e: CATH_1pdwC00 (C:1002-1188)
1f: CATH_1pdwD00 (D:1202-1388)
1g: CATH_1pdwF00 (F:2202-2388)
1h: CATH_1pdwH00 (H:3202-3388)
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(
)
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)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Human (Homo sapiens)
(27)
1a
1pdwG00
G:3002-3192
1b
1pdwE00
E:2002-2190
1c
1pdwA00
A:2-188
1d
1pdwB00
B:202-388
1e
1pdwC00
C:1002-1188
1f
1pdwD00
D:1202-1388
1g
1pdwF00
F:2202-2388
1h
1pdwH00
H:3202-3388
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_DJ_1_PfpI_1pdwH01 (H:3232-3373)
1b: PFAM_DJ_1_PfpI_1pdwH02 (H:3232-3373)
1c: PFAM_DJ_1_PfpI_1pdwH03 (H:3232-3373)
1d: PFAM_DJ_1_PfpI_1pdwH04 (H:3232-3373)
1e: PFAM_DJ_1_PfpI_1pdwH05 (H:3232-3373)
1f: PFAM_DJ_1_PfpI_1pdwH06 (H:3232-3373)
1g: PFAM_DJ_1_PfpI_1pdwH07 (H:3232-3373)
1h: PFAM_DJ_1_PfpI_1pdwH08 (H:3232-3373)
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Clans
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)
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Glutaminase_I
(73)
Family
:
DJ-1_PfpI
(29)
Homo sapiens (Human)
(13)
1a
DJ-1_PfpI-1pdwH01
H:3232-3373
1b
DJ-1_PfpI-1pdwH02
H:3232-3373
1c
DJ-1_PfpI-1pdwH03
H:3232-3373
1d
DJ-1_PfpI-1pdwH04
H:3232-3373
1e
DJ-1_PfpI-1pdwH05
H:3232-3373
1f
DJ-1_PfpI-1pdwH06
H:3232-3373
1g
DJ-1_PfpI-1pdwH07
H:3232-3373
1h
DJ-1_PfpI-1pdwH08
H:3232-3373
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Asym.Unit (249 KB)
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