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1PDQ
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Biol.Unit 1 (15 KB)
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(1)
Title
:
POLYCOMB CHROMODOMAIN COMPLEXED WITH THE HISTONE H3 TAIL CONTAINING TRIMETHYLLYSINE 27.
Authors
:
W. Fischle, Y. Wang, S. A. Jacobs, Y. Kim, C. D. Allis, S. Khorasanizadeh
Date
:
20 May 03 (Deposition) - 26 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Methyllysine, Chromodomain, Histone H3, Polycomb, Lysine Methylation, Trimethyllysine, Cation-Pi, Chromo, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Fischle, Y. Wang, S. A. Jacobs, Y. Kim, C. D. Allis, S. Khorasanizadeh
Molecular Basis For The Discrimination Of Repressive Methyl-Lysine Marks In Histone H3 By Polycomb And Hp1 Chromodomains
Genes Dev. V. 17 1870 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-TRIMETHYLLYSINE (M3La)
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Label:
No.
Name
Count
Type
Full Name
1
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_079021 (K27M, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_079021
K
28
M
H33_HUMAN
---
---
B
K
27
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CHROMO_2 (A:26-73)
2: CHROMO_1 (A:43-63)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHROMO_2
PS50013
Chromo and chromo shadow domain profile.
PC_DROME
26-84
1
A:26-73
2
CHROMO_1
PS00598
Chromo domain signature.
PC_DROME
43-63
1
A:43-63
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Exons
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SCOP Domains
(1, 1)
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1a: SCOP_d1pdqa_ (A:)
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Class
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All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Chromo domain-like
(82)
Family
:
Chromo domain
(41)
Protein domain
:
Polycomb protein, Pc
(2)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(2)
1a
d1pdqa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1pdqA00 (A:23-73)
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Class
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Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Fruit fly (Drosophila melanogaster)
(5)
1a
1pdqA00
A:23-73
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Chromo_1pdqA01 (A:26-73)
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Clan
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Tudor
(88)
Family
:
Chromo
(16)
Drosophila melanogaster (Fruit fly)
(5)
1a
Chromo-1pdqA01
A:26-73
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