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1P9D
Asym. Unit
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Asym.Unit (300 KB)
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Models
(10 )
Title
:
HIGH-RESOLUTION STRUCTURE OF THE COMPLEX OF HHR23A UBIQUITIN-LIKE DOMAIN AND THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A
Authors
:
T. D. Mueller, J. Feigon
Date
:
10 May 03 (Deposition) - 07 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : S,U (10 x)
Keywords
:
Protein-Peptide Complex, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. D. Mueller, J. Feigon
Structural Determinants For The Binding Of Ubiquitin-Like Domains To The Proteasome.
Embo J. V. 22 4634 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (U:3-78)
2: UIM (-|S:282-301)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RD23A_HUMAN
3-81
1
U:3-78
2
UIM
PS50330
Ubiquitin-interacting motif (UIM) domain profile.
PSMD4_HUMAN
211-230
282-301
1
-
S:282-301
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Exons
(2, 2)
Info
All Exons
Exon 1.7f (S:270-299)
Exon 1.8a (S:299-301)
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All Exon Boundaries
1: Boundary 1.7b/1.7f
2: Boundary 1.7f/1.8a
3: Boundary 1.8a/1.10e
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000368884
1a
ENSE00001810732
chr1:
151227179-151227284
106
PSMD4_HUMAN
1-9
9
0
-
-
1.3a
ENST00000368884
3a
ENSE00001805475
chr1:
151234637-151234777
141
PSMD4_HUMAN
9-56
48
0
-
-
1.4b
ENST00000368884
4b
ENSE00001681068
chr1:
151236390-151236504
115
PSMD4_HUMAN
56-94
39
0
-
-
1.5a
ENST00000368884
5a
ENSE00001646100
chr1:
151237308-151237394
87
PSMD4_HUMAN
95-123
29
0
-
-
1.5e
ENST00000368884
5e
ENSE00001776519
chr1:
151237642-151237710
69
PSMD4_HUMAN
124-146
23
0
-
-
1.6c
ENST00000368884
6c
ENSE00002196941
chr1:
151237870-151238085
216
PSMD4_HUMAN
147-218
72
0
-
-
1.7b
ENST00000368884
7b
ENSE00001633563
chr1:
151238480-151238588
109
PSMD4_HUMAN
219-255
37
0
-
-
1.7f
ENST00000368884
7f
ENSE00001779012
chr1:
151238784-151238915
132
PSMD4_HUMAN
255-299
45
1
S:270-299
30
1.8a
ENST00000368884
8a
ENSE00001708925
chr1:
151238996-151239063
68
PSMD4_HUMAN
299-321
23
1
S:299-301
3
1.10e
ENST00000368884
10e
ENSE00001448199
chr1:
151239649-151239955
307
PSMD4_HUMAN
322-377
56
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1p9du_ (U:)
2a: SCOP_d1p9ds_ (S:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1p9du_
U:
Class
:
Peptides
(792)
Fold
:
Ubiquitin interacting motif (UIM)
(6)
Superfamily
:
Ubiquitin interacting motif (UIM)
(6)
Family
:
Ubiquitin interacting motif (UIM)
(6)
Protein domain
:
26s proteasome non-ATPase regulatory subunit 4 (s5a)
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1p9ds_
S:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1p9dU00 (U:1-78)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
1p9dU00
U:1-78
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_ubiquitin_1p9dU01 (U:8-78)
2a: PFAM_UIM_1p9dS01 (S:281-298)
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Clan
:
Ubiquitin
(279)
Family
:
ubiquitin
(99)
Homo sapiens (Human)
(67)
1a
ubiquitin-1p9dU01
U:8-78
Clan
:
no clan defined [family: UIM]
(9)
Family
:
UIM
(9)
Homo sapiens (Human)
(9)
2a
UIM-1p9dS01
S:281-298
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Asymmetric Unit 1
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