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1P5V
Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE CAF1M:CAF1 CHAPERONE:SUBUNIT PREASSEMBLY COMPLEX
Authors
:
A. V. Zavialov, J. Berglund, A. F. Pudney, L. J. Fooks, T. M. Ibrahim, S. Macintyre, S. D. Knight
Date
:
28 Apr 03 (Deposition) - 24 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Chaperone, Chaperone-Target Complex, Chaperone-Subunit Complex, Protein Fiber, Donor Strand Complementation, Donor Strand Exchange, Structural Protein
(Keyword Search:
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Reference
:
A. V. Zavialov, J. Berglund, A. F. Pudney, L. J. Fooks, T. M. Ibrahim, S. Macintyre, S. D. Knight
Structure And Biogenesis Of The Capsular F1 Antigen From Yersinia Pestis. Preserved Folding Energy Drives Fiber Formation
Cell(Cambridge, Mass. ) V. 113 587 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PILI_CHAPERONE (A:87-103)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PILI_CHAPERONE
PS00635
Gram-negative pili assembly chaperone signature.
CAF1M_YERPE
110-127
1
A:87-103
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1p5va2 (A:148-233)
2a: SCOP_d1p5vb_ (B:)
3a: SCOP_d1p5va1 (A:7-147)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
Periplasmic chaperone C-domain
(38)
Family
:
Periplasmic chaperone C-domain
(33)
Protein domain
:
Caf1m
(8)
Yersinia pestis [TaxId: 632]
(8)
1a
d1p5va2
A:148-233
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Pilus subunits
(59)
Protein domain
:
F1 capsule antigen Caf1
(6)
Yersinia pestis [TaxId: 632]
(6)
2a
d1p5vb_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PapD-like
(47)
Family
:
Pilus chaperone
(36)
Protein domain
:
Chaperone protein Caf1m
(8)
Yersinia pestis [TaxId: 632]
(8)
3a
d1p5va1
A:7-147
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1p5vA02 (A:149-230)
2a: CATH_1p5vB00 (B:14-149)
3a: CATH_1p5vA01 (A:14-145)
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Organisms
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1070, no name defined]
(29)
Yersinia pestis. Organism_taxid: 632. Strain: kim5.
(2)
1a
1p5vA02
A:149-230
Homologous Superfamily
:
[code=2.60.40.1310, no name defined]
(6)
Yersinia pestis. Organism_taxid: 632. Strain: kim5.
(2)
2a
1p5vB00
B:14-149
Homologous Superfamily
:
PapD-like
(38)
Yersinia pestis. Organism_taxid: 632. Strain: kim5.
(2)
3a
1p5vA01
A:14-145
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Pili_assembly_N_1p5vA01 (A:13-148)
2a: PFAM_Antig_Caf1_1p5vB01 (B:14-149)
3a: PFAM_Pili_assembly_C_1p5vA02 (A:167-230)
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Clans
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Families
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Organisms
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)
(
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Clan
:
E-set
(290)
Family
:
Pili_assembly_N
(20)
Yersinia pestis
(4)
1a
Pili_assembly_N-1p5vA01
A:13-148
Clan
:
no clan defined [family: Antig_Caf1]
(3)
Family
:
Antig_Caf1
(3)
Yersinia pestis
(3)
2a
Antig_Caf1-1p5vB01
B:14-149
Clan
:
no clan defined [family: Pili_assembly_C]
(20)
Family
:
Pili_assembly_C
(20)
Yersinia pestis
(4)
3a
Pili_assembly_C-1p5vA02
A:167-230
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