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1P3F
Asym. Unit
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Asym.Unit (230 KB)
Biol.Unit 1 (222 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STUDIES OF NUCLEOSOME CORE PARTICLES CONTAINING HISTONE 'SIN' MUTANTS
Authors
:
U. M. Muthurajan, Y. Bao, L. J. Forsberg, R. S. Edayathumangalam, P. N. Dyer, C. L. White, K. Luger
Date
:
17 Apr 03 (Deposition) - 24 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Sin Mutants, Nucleosome Core Particle, Chromatin, Protein/Dna Interaction, Structural Protein/Dna Complex
(Keyword Search:
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]
)
Reference
:
U. M. Muthurajan, Y. Bao, L. J. Forsberg, R. S. Edayathumangalam, P. N. Dyer, C. L. White, K. Luger
Crystal Structures Of Histone Sin Mutant Nucleosomes Reveal Altered Protein-Dna Interactions
Embo J. V. 23 260 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H2A (C:821-827,G:1021-1027)
2: HISTONE_H3_2 (A:466-474,E:666-674)
3: HISTONE_H2B (D:1289-1311,H:1489-1511)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H2A
PS00046
Histone H2A signature.
H2A1_XENLA
22-28
2
C:821-827
G:1021-1027
2
HISTONE_H3_2
PS00959
Histone H3 signature 2.
H32_XENLA
67-75
2
A:466-474
E:666-674
3
HISTONE_H2B
PS00357
Histone H2B signature.
H2B11_XENLA
93-115
2
D:1289-1311
H:1489-1511
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1p3fc_ (C:)
1b: SCOP_d1p3fg_ (G:)
2a: SCOP_d1p3fd_ (D:)
2b: SCOP_d1p3fh_ (H:)
3a: SCOP_d1p3fa_ (A:)
3b: SCOP_d1p3fe_ (E:)
4a: SCOP_d1p3fb_ (B:)
4b: SCOP_d1p3ff_ (F:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Histone-fold
(277)
Superfamily
:
Histone-fold
(277)
Family
:
Nucleosome core histones
(247)
Protein domain
:
Histone H2A
(45)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(34)
1a
d1p3fc_
C:
1b
d1p3fg_
G:
Protein domain
:
Histone H2B
(48)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(35)
2a
d1p3fd_
D:
2b
d1p3fh_
H:
Protein domain
:
Histone H3
(58)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(39)
3a
d1p3fa_
A:
3b
d1p3fe_
E:
Protein domain
:
Histone H4
(60)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(38)
4a
d1p3fb_
B:
4b
d1p3ff_
F:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1p3fA00 (A:437-535)
1b: CATH_1p3fC00 (C:815-918)
1c: CATH_1p3fG00 (G:1013-1119)
1d: CATH_1p3fF00 (F:221-302)
1e: CATH_1p3fB00 (B:23-102)
1f: CATH_1p3fE00 (E:637-735)
1g: CATH_1p3fD00 (D:1232-1322)
1h: CATH_1p3fH00 (H:1428-1522)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Histone, subunit A
(62)
Homologous Superfamily
:
Histone, subunit A
(62)
Human (Homo sapiens)
(28)
1a
1p3fA00
A:437-535
1b
1p3fC00
C:815-918
1c
1p3fG00
G:1013-1119
1d
1p3fF00
F:221-302
1e
1p3fB00
B:23-102
1f
1p3fE00
E:637-735
1g
1p3fD00
D:1232-1322
1h
1p3fH00
H:1428-1522
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Histone_1p3fG01 (G:1017-1090)
1b: PFAM_Histone_1p3fG02 (G:1017-1090)
1c: PFAM_Histone_1p3fH01 (H:1428-1498)
1d: PFAM_Histone_1p3fH02 (H:1428-1498)
1e: PFAM_Histone_1p3fE01 (E:657-731)
1f: PFAM_Histone_1p3fE02 (E:657-731)
1g: PFAM_Histone_1p3fF01 (F:224-293)
1h: PFAM_Histone_1p3fF02 (F:224-293)
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Clan
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Histone
(49)
Family
:
Histone
(46)
Xenopus laevis (African clawed frog)
(32)
1a
Histone-1p3fG01
G:1017-1090
1b
Histone-1p3fG02
G:1017-1090
1c
Histone-1p3fH01
H:1428-1498
1d
Histone-1p3fH02
H:1428-1498
1e
Histone-1p3fE01
E:657-731
1f
Histone-1p3fE02
E:657-731
1g
Histone-1p3fF01
F:224-293
1h
Histone-1p3fF02
F:224-293
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Asym.Unit (230 KB)
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