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1P1A
Asym. Unit
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Asym.Unit (321 KB)
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Models
(14 )
Title
:
NMR STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B
Authors
:
K. S. Ryu, K. J. Lee, S. H. Bae, B. K. Kim, K. A. Kim, B. S. Choi
Date
:
11 Apr 03 (Deposition) - 13 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (14 x)
Keywords
:
Ubiquitin-Like, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. S. Ryu, K. J. Lee, S. H. Bae, B. K. Kim, K. A. Kim, B. S. Choi
Binding Surface Mapping Of Intra- And Interdomain Interactions Among Hhr23B, Ubiquitin, And Polyubiquitin Binding Site 2 Of S5A
J. Biol. Chem. V. 278 36621 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:4-82)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RD23B_HUMAN
1-79
1
A:4-82
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Exons
(4, 4)
Info
All Exons
Exon 1.1c (A:4-25)
Exon 1.3 (A:26-53)
Exon 1.4 (A:53-79)
Exon 1.5c (A:80-85)
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5c
5: Boundary 1.5c/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000358015
1c
ENSE00001861528
chr9:
110045560-110045976
417
RD23B_HUMAN
1-22
22
1
A:4-25
22
1.3
ENST00000358015
3
ENSE00001675036
chr9:
110062422-110062503
82
RD23B_HUMAN
23-50
28
1
A:26-53
28
1.4
ENST00000358015
4
ENSE00001703228
chr9:
110064316-110064395
80
RD23B_HUMAN
50-76
27
1
A:53-79
27
1.5c
ENST00000358015
5c
ENSE00000926767
chr9:
110068660-110068928
269
RD23B_HUMAN
77-166
90
1
A:80-85
6
1.6
ENST00000358015
6
ENSE00000926768
chr9:
110073963-110074018
56
RD23B_HUMAN
166-185
20
0
-
-
1.7
ENST00000358015
7
ENSE00000926769
chr9:
110081033-110081160
128
RD23B_HUMAN
185-227
43
0
-
-
1.8
ENST00000358015
8
ENSE00000926770
chr9:
110084264-110084399
136
RD23B_HUMAN
228-273
46
0
-
-
1.9
ENST00000358015
9
ENSE00000926771
chr9:
110086171-110086298
128
RD23B_HUMAN
273-315
43
0
-
-
1.10a
ENST00000358015
10a
ENSE00000718037
chr9:
110087115-110087285
171
RD23B_HUMAN
316-372
57
0
-
-
1.11a
ENST00000358015
11a
ENSE00001401087
chr9:
110091824-110094475
2652
RD23B_HUMAN
373-409
37
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1p1aa_ (A:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1p1aa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1p1aA00 (A:1-85)
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)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
1p1aA00
A:1-85
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ubiquitin_1p1aA01 (A:9-81)
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Clan
:
Ubiquitin
(279)
Family
:
ubiquitin
(99)
Homo sapiens (Human)
(67)
1a
ubiquitin-1p1aA01
A:9-81
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