PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1OU5
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (97 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CCA-ADDING ENZYME
Authors
:
M. A. Augustin, A. S. Reichert, H. Betat, R. Huber, M. Moerl, C. Steegborn
Date
:
24 Mar 03 (Deposition) - 06 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Trna, Polymerase, Nucleotidyltransferase, Translation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Augustin, A. S. Reichert, H. Betat, R. Huber, M. Moerl, C. Steegborn
Crystal Structure Of The Human Cca-Adding Enzyme: Insights Into Template-Independent Polymerization
J. Mol. Biol. V. 328 985 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_072421 (T125I, chain A/B, )
2: VAR_072422 (M129V, chain A/B, )
3: VAR_072423 (L137S, chain A/B, )
4: VAR_072424 (R161I, chain A/B, )
5: VAR_072425 (I194T, chain A/B, )
6: VAR_072426 (I297T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_072421
T
154
I
TRNT1_HUMAN
Disease (SIFD)
---
A/B
T
125
I
2
UniProt
VAR_072422
M
158
V
TRNT1_HUMAN
Disease (SIFD)
---
A/B
M
129
V
3
UniProt
VAR_072423
L
166
S
TRNT1_HUMAN
Disease (SIFD)
---
A/B
L
137
S
4
UniProt
VAR_072424
R
190
I
TRNT1_HUMAN
Disease (SIFD)
---
A/B
R
161
I
5
UniProt
VAR_072425
I
223
T
TRNT1_HUMAN
Disease (SIFD)
---
A/B
I
194
T
6
UniProt
VAR_072426
I
326
T
TRNT1_HUMAN
Disease (SIFD)
---
A/B
I
297
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(7, 14)
Info
All Exons
Exon 1.2a (A:-1-21 | B:-1-21)
Exon 1.6c (A:21-85 | B:21-85)
Exon 1.7a (A:86-132 (gaps) | B:86-132 (gaps))
Exon 1.8 (A:132-174 | B:132-174)
Exon 1.9b (A:174-239 | B:174-239)
Exon 1.10 (A:239-323 | B:239-323)
Exon 1.11b (A:324-354 | B:324-354)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.6c
3: Boundary 1.6c/1.7a
4: Boundary 1.7a/1.8
5: Boundary 1.8/1.9b
6: Boundary 1.9b/1.10
7: Boundary 1.10/1.11b
8: Boundary 1.11b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251607
1a
ENSE00001416815
chr3:
3168600-3168674
75
TRNT1_HUMAN
-
0
0
-
-
1.2a
ENST00000251607
2a
ENSE00002201846
chr3:
3170698-3170872
175
TRNT1_HUMAN
1-50
50
2
A:-1-21
B:-1-21
23
23
1.6c
ENST00000251607
6c
ENSE00000997141
chr3:
3178944-3179137
194
TRNT1_HUMAN
50-114
65
2
A:21-85
B:21-85
65
65
1.7a
ENST00000251607
7a
ENSE00000997135
chr3:
3182194-3182332
139
TRNT1_HUMAN
115-161
47
2
A:86-132 (gaps)
B:86-132 (gaps)
47
47
1.8
ENST00000251607
8
ENSE00000997136
chr3:
3186268-3186394
127
TRNT1_HUMAN
161-203
43
2
A:132-174
B:132-174
43
43
1.9b
ENST00000251607
9b
ENSE00001387479
chr3:
3188114-3188307
194
TRNT1_HUMAN
203-268
66
2
A:174-239
B:174-239
66
66
1.10
ENST00000251607
10
ENSE00000851845
chr3:
3189134-3189387
254
TRNT1_HUMAN
268-352
85
2
A:239-323
B:239-323
85
85
1.11b
ENST00000251607
11b
ENSE00001528667
chr3:
3189590-3190707
1118
TRNT1_HUMAN
353-434
82
2
A:324-354
B:324-354
31
31
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ou5a1 (A:151-354)
1b: SCOP_d1ou5b1 (B:151-354)
2a: SCOP_d1ou5a2 (A:-1-150)
2b: SCOP_d1ou5b2 (B:-1-150)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Poly A polymerase C-terminal region-like
(5)
Superfamily
:
Poly A polymerase C-terminal region-like
(5)
Family
:
Poly A polymerase C-terminal region-like
(5)
Protein domain
:
tRNA CCA-adding enzyme, C-terminal domains
(4)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(1)
1a
d1ou5a1
A:151-354
1b
d1ou5b1
B:151-354
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
Poly A polymerase head domain-like
(5)
Protein domain
:
tRNA CCA-adding enzyme, head domain
(4)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(1)
2a
d1ou5a2
A:-1-150
2b
d1ou5b2
B:-1-150
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ou5A01 (A:-1-150)
1b: CATH_1ou5B01 (B:-1-150)
2a: CATH_1ou5A02 (A:151-354)
2b: CATH_1ou5B02 (B:151-354)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta Polymerase; domain 2
(187)
Homologous Superfamily
:
Beta Polymerase, domain 2
(183)
Human (Homo sapiens)
(22)
1a
1ou5A01
A:-1-150
1b
1ou5B01
B:-1-150
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
cca-adding enzyme, domain 2
(1)
Homologous Superfamily
:
cca-adding enzyme, domain 2
(1)
Human (Homo sapiens)
(1)
2a
1ou5A02
A:151-354
2b
1ou5B02
B:151-354
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_PolyA_pol_1ou5B01 (B:30-153)
1b: PFAM_PolyA_pol_1ou5B02 (B:30-153)
2a: PFAM_PolyA_pol_RNAbd_1ou5B03 (B:186-242)
2b: PFAM_PolyA_pol_RNAbd_1ou5B04 (B:186-242)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NTP_transf
(45)
Family
:
PolyA_pol
(4)
Homo sapiens (Human)
(1)
1a
PolyA_pol-1ou5B01
B:30-153
1b
PolyA_pol-1ou5B02
B:30-153
Clan
:
no clan defined [family: PolyA_pol_RNAbd]
(3)
Family
:
PolyA_pol_RNAbd
(3)
Homo sapiens (Human)
(1)
2a
PolyA_pol_RNAbd-1ou5B03
B:186-242
2b
PolyA_pol_RNAbd-1ou5B04
B:186-242
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (106 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1OU5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help