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1OT7
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR 3-DEOXY-CDCA BINDING AND ACTIVATION OF FXR
Authors
:
L. Z. Mi, S. Devarakonda, J. M. Harp, Q. Han, R. Pellicciari, T. M. Willson, S. Khorasanizadeh, F. Rastinejad
Date
:
21 Mar 03 (Deposition) - 23 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D,E (1x)
Keywords
:
Bile Acid, Nuclear Receptor, Coactivator, Ligand Binding Domain, Fxr, Hormone/Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Z. Mi, S. Devarakonda, J. M. Harp, Q. Han, R. Pellicciari, T. M. Willson, S. Khorasanizadeh, F. Rastinejad
Structural Basis For Bile Acid Binding And Activation Of The Nuclear Receptor Fxr
Mol. Cell V. 11 1093 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 6-ETHYL-CHENODEOXYCHOLIC ACID (CHCa)
2a: ISO-URSODEOXYCHOLIC ACID (IU5a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CHC
1
Ligand/Ion
6-ETHYL-CHENODEOXYCHOLIC ACID
2
IU5
1
Ligand/Ion
ISO-URSODEOXYCHOLIC ACID
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET B:287 , ALA B:288 , HIS B:291 , MET B:325 , PHE B:326 , ARG B:328 , SER B:329 , ILE B:332 , PHE B:333 , ILE B:349 , TYR B:358 , TYR B:366 , HIS B:444
BINDING SITE FOR RESIDUE IU5 B 1002
2
AC2
SOFTWARE
MET A:262 , ALA A:288 , HIS A:291 , PHE A:326 , ARG A:328 , SER A:329 , ILE A:332 , ILE A:349 , TYR A:358 , PHE A:363 , TYR A:366 , HIS A:444
BINDING SITE FOR RESIDUE CHC A 1001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.7 (A:240-270 | B:240-270)
Exon 1.8 (A:271-304 | B:271-304)
Exon 1.9 (A:304-353 | B:304-353)
Exon 1.10 (A:353-391 | B:353-391)
Exon 1.11 (A:391-468 | B:391-468)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000009910
1
ENSRNOE00000353369
chr7:
26307061-26306959
103
NR1H4_RAT
-
0
0
-
-
1.2
ENSRNOT00000009910
2
ENSRNOE00000069662
chr7:
26276740-26276606
135
NR1H4_RAT
1-23
23
0
-
-
1.4
ENSRNOT00000009910
4
ENSRNOE00000066613
chr7:
26258318-26257950
369
NR1H4_RAT
23-146
124
0
-
-
1.5a
ENSRNOT00000009910
5a
ENSRNOE00000336037
chr7:
26240305-26240165
141
NR1H4_RAT
146-193
48
0
-
-
1.6
ENSRNOT00000009910
6
ENSRNOE00000066952
chr7:
26237700-26237567
134
NR1H4_RAT
193-237
45
0
-
-
1.7
ENSRNOT00000009910
7
ENSRNOE00000067172
chr7:
26235927-26235829
99
NR1H4_RAT
238-270
33
2
A:240-270
B:240-270
31
31
1.8
ENSRNOT00000009910
8
ENSRNOE00000067330
chr7:
26235495-26235396
100
NR1H4_RAT
271-304
34
2
A:271-304
B:271-304
34
34
1.9
ENSRNOT00000009910
9
ENSRNOE00000067481
chr7:
26230774-26230628
147
NR1H4_RAT
304-353
50
2
A:304-353
B:304-353
50
50
1.10
ENSRNOT00000009910
10
ENSRNOE00000067646
chr7:
26191941-26191828
114
NR1H4_RAT
353-391
39
2
A:353-391
B:353-391
39
39
1.11
ENSRNOT00000009910
11
ENSRNOE00000342572
chr7:
26190485-26189759
727
NR1H4_RAT
391-469
79
2
A:391-468
B:391-468
78
78
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ot7a_ (A:)
1b: SCOP_d1ot7b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Bile acid receptor FXR
(9)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d1ot7a_
A:
1b
d1ot7b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ot7A00 (A:240-468)
1b: CATH_1ot7B00 (B:240-468)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Norway rat (Rattus norvegicus)
(18)
1a
1ot7A00
A:240-468
1b
1ot7B00
B:240-468
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1ot7B01 (B:242-461)
1b: PFAM_Hormone_recep_1ot7B02 (B:242-461)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Rattus norvegicus (Rat)
(22)
1a
Hormone_recep-1ot7B01
B:242-461
1b
Hormone_recep-1ot7B02
B:242-461
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (91 KB)
Header - Asym.Unit
Biol.Unit 1 (43 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
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