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Biol. Unit 2
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Asym.Unit (99 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (48 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF AUGMENTER OF LIVER REGENERATION: A MAMMALIAN FAD DEPENDENT SULFHYDRYL OXIDASE
Authors
:
J. P. Rose, C. -K. Wu, B. -C. Wang
Date
:
07 Mar 03 (Deposition) - 15 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Sulfhydryl Oxidase, Liver Regeneration, Alr, Helix-Turn-Helix, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. -K. Wu, T. A. Dailey, H. A. Dailey, B. -C. Wang, J. P. Rose
The Refined Crystal Structure Of Augmenter Of Liver Regeneration
Int. Union Cryst. (Meeting) V. 1 293 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
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No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: CTB (AUTHOR)
4: CTD (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG B:19 , GLU B:20 , GLY B:23 , ARG B:24 , TRP B:27 , HIS B:31 , PHE B:56 , TYR B:60 , CYS B:65 , CYS B:91 , HIS B:94 , ASN B:95 , VAL B:97 , ASN B:98 , LYS B:100 , LEU B:101 , LYS B:103 , PHE B:106 , ARG B:114 , TRP B:115 , HOH B:135 , HOH B:152 , HOH B:167 , HOH B:174 , HOH B:192 , HOH B:198 , HOH B:215 , HOH B:232 , HOH B:276
BINDING SITE FOR RESIDUE FAD B 126
2
AC4
SOFTWARE
ARG D:19 , GLU D:20 , GLY D:23 , ARG D:24 , TRP D:27 , HIS D:31 , PHE D:56 , TYR D:60 , CYS D:65 , ASP D:68 , ILE D:69 , CYS D:91 , HIS D:94 , ASN D:95 , VAL D:97 , ASN D:98 , LYS D:100 , LEU D:101 , LYS D:103 , PHE D:106 , ARG D:114 , TRP D:115 , HOH D:144 , HOH D:148 , HOH D:159 , HOH D:162 , HOH D:164 , HOH D:183 , HOH D:187 , HOH D:193 , HOH D:261 , HOH D:269
BINDING SITE FOR RESIDUE FAD D 126
3
CTB
AUTHOR
CYS B:62 , CYS B:65 , FAD B:126
PUTATIVE CATALYTIC SITE
4
CTD
AUTHOR
CYS D:62 , CYS D:65 , FAD D:126
PUTATIVE CATALYTIC SITE
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ERV_ALR (B:15-115,D:15-115)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ERV_ALR
PS51324
ERV/ALR sulfhydryl oxidase domain profile.
ALR_RAT
88-188
2
-
B:15-115
-
D:15-115
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Exons
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1oqca_ (A:)
1b: SCOP_d1oqcb_ (B:)
1c: SCOP_d1oqcc_ (C:)
1d: SCOP_d1oqcd_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
FAD-dependent thiol oxidase
(15)
Family
:
FAD-dependent thiol oxidase
(10)
Protein domain
:
Augmenter of liver regeneration
(7)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1oqca_
A:
1b
d1oqcb_
B:
1c
d1oqcc_
C:
1d
d1oqcd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1oqcB00 (B:14-124)
1b: CATH_1oqcA00 (A:13-124)
1c: CATH_1oqcC00 (C:13-124)
1d: CATH_1oqcD00 (D:13-124)
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.310, no name defined]
(4)
Norway rat (Rattus norvegicus)
(1)
1a
1oqcB00
B:14-124
1b
1oqcA00
A:13-124
1c
1oqcC00
C:13-124
1d
1oqcD00
D:13-124
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Evr1_Alr_1oqcD01 (D:24-117)
1b: PFAM_Evr1_Alr_1oqcD02 (D:24-117)
1c: PFAM_Evr1_Alr_1oqcD03 (D:24-117)
1d: PFAM_Evr1_Alr_1oqcD04 (D:24-117)
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Clan
:
no clan defined [family: Evr1_Alr]
(7)
Family
:
Evr1_Alr
(7)
Rattus norvegicus (Rat)
(1)
1a
Evr1_Alr-1oqcD01
D:24-117
1b
Evr1_Alr-1oqcD02
D:24-117
1c
Evr1_Alr-1oqcD03
D:24-117
1d
Evr1_Alr-1oqcD04
D:24-117
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Asymmetric Unit 1
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