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1OLY
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(1)
Title
:
HUMAN THIAMIN PYROPHOSPHOKINASE / PP20
Authors
:
L. Barna, S. Bellyei, A. Szigeti, A. Boronkai, N. G. Than, P. Zavodszky, B. Sumegi
Date
:
19 Aug 03 (Deposition) - 24 Sep 04 (Release) - 27 Jan 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B
Keywords
:
Thiamin Pyrophosphokinase, Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bellyei, A. Szigeti, A. Boronkai, Z. Szabo, J. Bene, T. Janaky, L. Barna, K. Sipos, O. Minik, A. Kravjak, R. Ohmacht, B. Melegh, P. Zavodszky, G. N. Than, B. Sumegi, H. Bohn, N. G. Than
Cloning, Sequencing, Structural And Molecular Biological Characterization Of Placental Protein 20 (Pp20)/Human Thiamin Pyrophosphokinase (Htpk)
Placenta V. 26 34 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YL... (VIBa)
1b: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YL... (VIBb)
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Label:
No.
Name
Count
Type
Full Name
1
VIB
2
Ligand/Ion
3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067391 (L40P, chain A/B, )
2: VAR_067392 (N50H, chain A/B, )
3: VAR_067393 (N219S, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067391
L
40
P
TPK1_HUMAN
Disease (THMD5)
---
A/B
L
40
P
2
UniProt
VAR_067392
N
50
H
TPK1_HUMAN
Disease (THMD5)
---
A/B
N
50
H
3
UniProt
VAR_067393
N
219
S
TPK1_HUMAN
Disease (THMD5)
---
A/B
N
219
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
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Exons
(8, 16)
Info
All Exons
Exon 1.2 (A:1-15 | B:1-15)
Exon 1.3 (A:15-39 | B:15-39)
Exon 1.7 (A:39-62 | B:39-62)
Exon 1.10 (A:62-86 | B:62-86)
Exon 1.13a (A:87-118 | B:87-118)
Exon 1.15 (A:119-167 | B:119-167)
Exon 1.16 (A:168-205 | B:168-205)
Exon 1.18c (A:205-243 | B:205-243)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.7
4: Boundary 1.7/1.10
5: Boundary 1.10/1.13a
6: Boundary 1.13a/1.15
7: Boundary 1.15/1.16
8: Boundary 1.16/1.18c
9: Boundary 1.18c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000360057
1
ENSE00001409274
chr7:
144533146-144533060
87
TPK1_HUMAN
-
0
0
-
-
1.2
ENST00000360057
2
ENSE00002182942
chr7:
144532711-144532653
59
TPK1_HUMAN
1-15
15
2
A:1-15
B:1-15
15
15
1.3
ENST00000360057
3
ENSE00001730714
chr7:
144463044-144462973
72
TPK1_HUMAN
15-39
25
2
A:15-39
B:15-39
25
25
1.7
ENST00000360057
7
ENSE00001770717
chr7:
144380071-144380002
70
TPK1_HUMAN
39-62
24
2
A:39-62
B:39-62
24
24
1.10
ENST00000360057
10
ENSE00001726205
chr7:
144345972-144345900
73
TPK1_HUMAN
62-86
25
2
A:62-86
B:62-86
25
25
1.13a
ENST00000360057
13a
ENSE00001598131
chr7:
144320354-144320259
96
TPK1_HUMAN
87-118
32
2
A:87-118
B:87-118
32
32
1.15
ENST00000360057
15
ENSE00001793151
chr7:
144288662-144288516
147
TPK1_HUMAN
119-167
49
2
A:119-167
B:119-167
49
49
1.16
ENST00000360057
16
ENSE00001748218
chr7:
144245695-144245584
112
TPK1_HUMAN
168-205
38
2
A:168-205
B:168-205
38
38
1.18c
ENST00000360057
18c
ENSE00001925028
chr7:
144150756-144149034
1723
TPK1_HUMAN
205-243
39
2
A:205-243
B:205-243
39
39
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(0, 0)
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