10 20 30 40 50 60 70 80 1OLY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER KINASE 19-AUG-03 1OLY
TITLE HUMAN THIAMIN PYROPHOSPHOKINASE / PP20
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMIN PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THIAMINE PYROPHOSPHOKINASE, THIAMINE COMPND 5 DIPHOSPHOKINASE; COMPND 6 EC: 2.7.6.2
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 TISSUE: PLACENTA
KEYWDS THIAMIN PYROPHOSPHOKINASE, KINASE, TRANSFERASE
EXPDTA THEORETICAL MODEL
AUTHOR L.BARNA,S.BELLYEI,A.SZIGETI,A.BORONKAI,N.G.THAN,P.ZAVODSZKY, AUTHOR 2 B.SUMEGI
REVDAT 2 27-JAN-05 1OLY 1 JRNL REVDAT 1 24-SEP-04 1OLY 0
JRNL AUTH S.BELLYEI,A.SZIGETI,A.BORONKAI,Z.SZABO,J.BENE, JRNL AUTH 2 T.JANAKY,L.BARNA,K.SIPOS,O.MINIK,A.KRAVJAK, JRNL AUTH 3 R.OHMACHT,B.MELEGH,P.ZAVODSZKY,G.N.THAN,B.SUMEGI, JRNL AUTH 4 H.BOHN,N.G.THAN JRNL TITL CLONING, SEQUENCING, STRUCTURAL AND MOLECULAR JRNL TITL 2 BIOLOGICAL CHARACTERIZATION OF PLACENTAL PROTEIN JRNL TITL 3 20 (PP20)/HUMAN THIAMIN PYROPHOSPHOKINASE (HTPK) JRNL REF PLACENTA V. 26 34 2005 JRNL REFN UK ISSN 0143-4004
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NO REFINEMENT WAS DONE
REMARK 4 REMARK 4 1OLY COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 19-AUG-2003. REMARK 100 THE EBI ID CODE IS EBI-12739.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 243 O REMARK 470 SER B 243 O
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CG2 VAL B 195 N4A VIB B 487 2.16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 46 -119.50 39.25 REMARK 500 ASP B 46 -117.61 36.91
DBREF 1OLY A 1 243 UNP Q9H3S4 Q9H3S4 1 243 DBREF 1OLY B 1 243 UNP Q9H3S4 Q9H3S4 1 243
SEQRES 1 A 243 MET GLU HIS ALA PHE THR PRO LEU GLU PRO LEU LEU SER SEQRES 2 A 243 THR GLY ASN LEU LYS TYR CYS LEU VAL ILE LEU ASN GLN SEQRES 3 A 243 PRO LEU ASP ASN TYR PHE ARG HIS LEU TRP ASN LYS ALA SEQRES 4 A 243 LEU LEU ARG ALA CYS ALA ASP GLY GLY ALA ASN ARG LEU SEQRES 5 A 243 TYR ASP ILE THR GLU GLY GLU ARG GLU SER PHE LEU PRO SEQRES 6 A 243 GLU PHE ILE ASN GLY ASP PHE ASP SER ILE ARG PRO GLU SEQRES 7 A 243 VAL ARG GLU TYR TYR ALA THR LYS GLY CYS GLU LEU ILE SEQRES 8 A 243 SER THR PRO ASP GLN ASP HIS THR ASP PHE THR LYS CYS SEQRES 9 A 243 LEU LYS MET LEU GLN LYS LYS ILE GLU GLU LYS ASP LEU SEQRES 10 A 243 LYS VAL ASP VAL ILE VAL THR LEU GLY GLY LEU ALA GLY SEQRES 11 A 243 ARG PHE ASP GLN ILE MET ALA SER VAL ASN THR LEU PHE SEQRES 12 A 243 GLN ALA THR HIS ILE THR PRO PHE PRO ILE ILE ILE ILE SEQRES 13 A 243 GLN GLU GLU SER LEU ILE TYR LEU LEU GLN PRO GLY LYS SEQRES 14 A 243 HIS ARG LEU HIS VAL ASP THR GLY MET GLU GLY ASP TRP SEQRES 15 A 243 CYS GLY LEU ILE PRO VAL GLY GLN PRO CYS MET GLN VAL SEQRES 16 A 243 THR THR THR GLY LEU LYS TRP ASN LEU THR ASN ASP VAL SEQRES 17 A 243 LEU ALA PHE GLY THR LEU VAL SER THR SER ASN THR TYR SEQRES 18 A 243 ASP GLY SER GLY VAL VAL THR VAL GLU THR ASP HIS PRO SEQRES 19 A 243 LEU LEU TRP THR MET ALA ILE LYS SER SEQRES 1 B 243 MET GLU HIS ALA PHE THR PRO LEU GLU PRO LEU LEU SER SEQRES 2 B 243 THR GLY ASN LEU LYS TYR CYS LEU VAL ILE LEU ASN GLN SEQRES 3 B 243 PRO LEU ASP ASN TYR PHE ARG HIS LEU TRP ASN LYS ALA SEQRES 4 B 243 LEU LEU ARG ALA CYS ALA ASP GLY GLY ALA ASN ARG LEU SEQRES 5 B 243 TYR ASP ILE THR GLU GLY GLU ARG GLU SER PHE LEU PRO SEQRES 6 B 243 GLU PHE ILE ASN GLY ASP PHE ASP SER ILE ARG PRO GLU SEQRES 7 B 243 VAL ARG GLU TYR TYR ALA THR LYS GLY CYS GLU LEU ILE SEQRES 8 B 243 SER THR PRO ASP GLN ASP HIS THR ASP PHE THR LYS CYS SEQRES 9 B 243 LEU LYS MET LEU GLN LYS LYS ILE GLU GLU LYS ASP LEU SEQRES 10 B 243 LYS VAL ASP VAL ILE VAL THR LEU GLY GLY LEU ALA GLY SEQRES 11 B 243 ARG PHE ASP GLN ILE MET ALA SER VAL ASN THR LEU PHE SEQRES 12 B 243 GLN ALA THR HIS ILE THR PRO PHE PRO ILE ILE ILE ILE SEQRES 13 B 243 GLN GLU GLU SER LEU ILE TYR LEU LEU GLN PRO GLY LYS SEQRES 14 B 243 HIS ARG LEU HIS VAL ASP THR GLY MET GLU GLY ASP TRP SEQRES 15 B 243 CYS GLY LEU ILE PRO VAL GLY GLN PRO CYS MET GLN VAL SEQRES 16 B 243 THR THR THR GLY LEU LYS TRP ASN LEU THR ASN ASP VAL SEQRES 17 B 243 LEU ALA PHE GLY THR LEU VAL SER THR SER ASN THR TYR SEQRES 18 B 243 ASP GLY SER GLY VAL VAL THR VAL GLU THR ASP HIS PRO SEQRES 19 B 243 LEU LEU TRP THR MET ALA ILE LYS SER
HET VIB B 487 21 HET VIB B 488 21
HETNAM VIB 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2- HETNAM 2 VIB HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
HETSYN VIB THIAMIN, VITAMIN B1
FORMUL 3 VIB 2(C12 H17 N4 O S 1+)
HELIX 1 1 LEU A 8 LEU A 12 5 5 HELIX 2 2 TYR A 31 ALA A 39 1 9 HELIX 3 3 GLY A 47 GLU A 57 1 11 HELIX 4 4 GLU A 59 PHE A 63 5 5 HELIX 5 5 ASP A 71 ILE A 75 5 5 HELIX 6 6 ARG A 76 GLY A 87 1 12 HELIX 7 7 THR A 99 ASP A 116 1 18 HELIX 8 8 ARG A 131 THR A 149 1 19 HELIX 9 9 LEU B 8 LEU B 12 5 5 HELIX 10 10 TYR B 31 ALA B 39 1 9 HELIX 11 11 GLY B 47 GLU B 57 1 11 HELIX 12 12 GLU B 59 PHE B 63 5 5 HELIX 13 13 ASP B 71 ILE B 75 5 5 HELIX 14 14 ARG B 76 GLY B 87 1 12 HELIX 15 15 THR B 99 ASP B 116 1 18 HELIX 16 16 ARG B 131 THR B 149 1 19
SHEET 1 AA 5 HIS A 3 PHE A 5 0 SHEET 2 AA 5 GLY A 168 HIS A 173 1 O LYS A 169 N HIS A 3 SHEET 3 AA 5 VAL A 226 THR A 231 -1 O VAL A 227 N LEU A 172 SHEET 4 AA 5 CYS A 192 THR A 198 -1 O THR A 196 N GLU A 230 SHEET 5 AA 5 ASP A 207 LEU A 209 -1 O ASP A 207 N VAL A 195 SHEET 1 AB10 GLU A 89 SER A 92 0 SHEET 2 AB10 PHE A 67 GLY A 70 1 O ILE A 68 N ILE A 91 SHEET 3 AB10 LEU A 41 ALA A 45 1 O CYS A 44 N ASN A 69 SHEET 4 AB10 TYR A 19 ILE A 23 1 O LEU A 21 N ALA A 43 SHEET 5 AB10 VAL A 121 LEU A 125 1 O VAL A 121 N CYS A 20 SHEET 6 AB10 ILE A 153 GLN A 157 1 O ILE A 154 N THR A 124 SHEET 7 AB10 SER A 160 LEU A 165 -1 O SER A 160 N GLN A 157 SHEET 8 AB10 LEU A 235 ILE A 241 -1 O LEU A 235 N LEU A 165 SHEET 9 AB10 GLU A 179 ILE A 186 -1 N GLY A 180 O ALA A 240 SHEET 10 AB10 SER A 216 ASN A 219 -1 O SER A 216 N LEU A 185 SHEET 1 BA 5 GLU B 2 PHE B 5 0 SHEET 2 BA 5 GLY B 168 HIS B 173 1 O LYS B 169 N HIS B 3 SHEET 3 BA 5 VAL B 226 THR B 231 -1 O VAL B 227 N LEU B 172 SHEET 4 BA 5 CYS B 192 THR B 198 -1 O THR B 196 N GLU B 230 SHEET 5 BA 5 ASP B 207 LEU B 209 -1 O ASP B 207 N VAL B 195 SHEET 1 BB10 GLU B 89 SER B 92 0 SHEET 2 BB10 PHE B 67 GLY B 70 1 O ILE B 68 N ILE B 91 SHEET 3 BB10 LEU B 41 ALA B 45 1 O CYS B 44 N ASN B 69 SHEET 4 BB10 TYR B 19 ILE B 23 1 O LEU B 21 N ALA B 43 SHEET 5 BB10 VAL B 121 LEU B 125 1 O VAL B 121 N CYS B 20 SHEET 6 BB10 ILE B 153 GLN B 157 1 O ILE B 154 N THR B 124 SHEET 7 BB10 SER B 160 LEU B 165 -1 O SER B 160 N GLN B 157 SHEET 8 BB10 LEU B 235 ILE B 241 -1 O LEU B 235 N LEU B 165 SHEET 9 BB10 GLU B 179 ILE B 186 -1 N GLY B 180 O ALA B 240 SHEET 10 BB10 SER B 216 ASN B 219 -1 O SER B 216 N LEU B 185
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000