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1OLN
Theor. Model
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Theoretical Model (53 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
MODEL FOR THIOSTREPTON ANTIBIOTIC BINDING TO L11 SUBSTRATE FROM 50S RIBOSOMAL RNA
Authors
:
G. Lentzen, R. Klinck, N. Matassova, F. Aboul-Ela, A. I. H. Murchie
Date
:
08 Aug 03 (Deposition) - 11 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
SOLUTION NMR; THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Ribosome-Antibiotic Complex, Thiopeptide, Antibacterial, Thiazole, Oxazole, Ribosome, L11, Translation Inhibition
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Lentzen, R. Klinck, N. Matassova, F. Aboul-Ela, A. I. H. Murchie
Structural Basis For Contrasting Activities Of Ribosome Binding Thiazole Antibiotics
Chem. Biol. V. 10 769 2003
(for further references see the
PDB file header
)
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Hetero Components
(8, 13)
Info
All Hetero Components
1a: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9a)
1b: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9b)
1c: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9c)
1d: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9d)
2a: (2E)-2-AMINOBUT-2-ENOIC ACID (DBUa)
3a: D-CYSTEINE (DCYa)
4a: 2-AMINO-ACRYLIC ACID (DHAa)
4b: 2-AMINO-ACRYLIC ACID (DHAb)
4c: 2-AMINO-ACRYLIC ACID (DHAc)
5a: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6a)
6a: AMINO GROUP (NH2a)
7a: 8-HYDROXY-4-(1-HYDROXYETHYL)QUINOL... (QUAa)
8a: (2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3... (TS9a)
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No.
Name
Count
Type
Full Name
1
BB9
4
Mod. Amino Acid
(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
2
DBU
1
Mod. Amino Acid
(2E)-2-AMINOBUT-2-ENOIC ACID
3
DCY
1
Mod. Amino Acid
D-CYSTEINE
4
DHA
3
Mod. Amino Acid
2-AMINO-ACRYLIC ACID
5
MH6
1
Mod. Amino Acid
3-HYDROXY-2-IMINOPROPANOIC ACID
6
NH2
1
Mod. Amino Acid
AMINO GROUP
7
QUA
1
Mod. Amino Acid
8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID
8
TS9
1
Mod. Amino Acid
(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:22 , A C:1067 , G C:1068 , A C:1095
BINDING SITE FOR CHAIN B OF THIOSTREPTON
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L11 (A:126-140)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L11
PS00359
Ribosomal protein L11 signature.
RL11_THEMA
126-141
1
A:126-140
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1olna_ (A:)
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Class
:
Low resolution protein structures
(283)
Fold
:
Computational models partly based on experimental data
(6)
Superfamily
:
Computational models partly based on experimental data
(6)
Family
:
Computational models partly based on experimental data
(6)
Protein domain
:
Ribosomal L11 protein in complex with thiostrepton and a 23S rRNA fragment
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1olna_
A:
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Ribosomal_L11_1olnA01 (A:71-139)
2a: PFAM_Ribosomal_L11_N_1olnA02 (A:8-66)
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Clan
:
no clan defined [family: Ribosomal_L11]
(35)
Family
:
Ribosomal_L11
(35)
Thermotoga maritima
(3)
1a
Ribosomal_L11-1olnA01
A:71-139
Clan
:
no clan defined [family: Ribosomal_L11_N]
(8)
Family
:
Ribosomal_L11_N
(8)
Thermotoga maritima
(3)
2a
Ribosomal_L11_N-1olnA02
A:8-66
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Theoretical Model (53 KB)
Header - Theoretical Model
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
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