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Getting 'Exon' information from database.
1OLL
Asym. Unit
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Asym.Unit (39 KB)
Biol.Unit 1 (35 KB)
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(1)
Title
:
EXTRACELLULAR REGION OF THE HUMAN RECEPTOR NKP46
Authors
:
M. Ponassi, C. Cantoni, R. Biassoni, R. Conte, A. Spallarossa, A. Pesce, A. Moretta, L. Moretta, M. Bolognesi, D. Bordo
Date
:
07 Aug 03 (Deposition) - 04 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Immune System/Receptor, Nk Cell Triggering Receptor, Immune System, Ig Domain, Cytotoxicity, C2-Type Ig-Like Domains
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ponassi, C. Cantoni, R. Biassoni, R. Conte, A. Spallarossa, A. Pesce, A. Moretta, L. Moretta, M. Bolognesi, D. Bordo
Structure Of The Human Nk Cell Triggering Receptor Nkp46 Ectodomain
Biochem. Biophys. Res. Commun. V. 309 317 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:37 , GLU A:39 , GLY A:40 , GLN A:71 , SER A:73 , HOH A:2052
BINDING SITE FOR RESIDUE EDO A1189
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018633 (K58Q, chain A, )
2: VAR_035527 (D63Y, chain A, )
3: VAR_NCTR1_HUMAN_CCDS12911_1_01 (D63Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018633
K
82
Q
NCTR1_HUMAN
Polymorphism
2278428
A
K
58
Q
2
UniProt
VAR_035527
D
87
Y
NCTR1_HUMAN
Unclassified
---
A
D
63
Y
3
CancerSNP
VAR_NCTR1_HUMAN_CCDS12911_1_01
*
D
87
Y
NCTR1_HUMAN
Disease (Colorectal cancer)
---
A
D
63
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:1-95)
Exon 1.4 (A:95-188)
Exon 1.5 (A:188-188)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6a
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000291890
1
ENSE00001380161
chr19:
55417508-55417579
72
NCTR1_HUMAN
1-12
12
0
-
-
1.2
ENST00000291890
2
ENSE00001052311
chr19:
55417657-55417692
36
NCTR1_HUMAN
12-24
13
0
-
-
1.3
ENST00000291890
3
ENSE00001052310
chr19:
55417881-55418165
285
NCTR1_HUMAN
24-119
96
1
A:1-95
95
1.4
ENST00000291890
4
ENSE00001312058
chr19:
55420604-55420882
279
NCTR1_HUMAN
119-212
94
1
A:95-188
94
1.5
ENST00000291890
5
ENSE00001052312
chr19:
55421378-55421425
48
NCTR1_HUMAN
212-228
17
1
A:188-188
1
1.6a
ENST00000291890
6a
ENSE00001052306
chr19:
55423536-55423586
51
NCTR1_HUMAN
228-245
18
0
-
-
1.7
ENST00000291890
7
ENSE00001308510
chr19:
55424058-55424439
382
NCTR1_HUMAN
245-304
60
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1olla1 (A:1-95)
1b: SCOP_d1olla2 (A:96-188)
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)
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)
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Ligand binding domain of NK receptor NKp46
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1olla1
A:1-95
1b
d1olla2
A:96-188
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ollA02 (A:96-188)
1b: CATH_1ollA01 (A:1-95)
View:
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Classes
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)
(
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)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Homo sapiens. Organism_taxid: 9606.
(14)
1a
1ollA02
A:96-188
1b
1ollA01
A:1-95
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Ig_2_1ollA01 (A:4-93)
2a: PFAM_Ig_3_1ollA02 (A:99-171)
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Clan
:
Ig
(577)
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
1a
Ig_2-1ollA01
A:4-93
Family
:
Ig_3
(11)
Homo sapiens (Human)
(9)
2a
Ig_3-1ollA02
A:99-171
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Chain A
Asymmetric Unit 1
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