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1OHZ
Biol. Unit 1
Info
Asym.Unit (37 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
COHESIN-DOCKERIN COMPLEX FROM THE CELLULOSOME OF CLOSTRIDIUM THERMOCELLUM
Authors
:
A. L. Carvalho, F. M. V. Dias, J. A. M. Prates, L. M. A. Ferreira, H. J. Gilbert, G. J. Davies, M. J. Romao, C. M. G. A. Fontes
Date
:
04 Jun 03 (Deposition) - 20 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Cell Adhesion, Cohesin/Dockerin Complex, Cohesin, Dockerin, Cellulosome, Clostridium Thermocellum, Cellulose Degradation
(Keyword Search:
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Reference
:
A. L. Carvalho, F. M. V. Dias, J. A. M. Prates, L. M. A. Ferreira, H. J. Gilbert, G. J. Davies, M. J. Romao, C. M. G. A. Fontes
Cellulosome Assembly Revealed By The Crystal Structure Of The Cohesin-Dockerin Complex
Proc. Natl. Acad. Sci. Usa V. 100 13809 2003
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
3a: 1,2-ETHANEDIOL (EDOa)
4a: NITRATE ION (NO3a)
4b: NITRATE ION (NO3b)
View:
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
NO3
6
Ligand/Ion
NITRATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:74 , PRO A:75 , ASP A:76 , ARG A:77 , EDO A:1147 , THR B:26
BINDING SITE FOR RESIDUE NO3 A1145
2
AC2
SOFTWARE
THR A:14 , ASN A:142 , VAL A:143 , GLY A:144 , HOH A:2072 , ALA B:33 , ARG B:34 , LYS B:39
BINDING SITE FOR RESIDUE NO3 A1146
3
AC3
SOFTWARE
ASP B:2 , ASN B:4 , ASP B:6 , THR B:8 , ASP B:13 , HOH B:2004
BINDING SITE FOR RESIDUE CA B1057
4
AC4
SOFTWARE
ASP B:36 , ASP B:38 , ASN B:40 , SER B:42 , ASP B:47 , HOH B:2036
BINDING SITE FOR RESIDUE CA B1058
5
AC5
SOFTWARE
ARG B:19 , HOH B:2014
BINDING SITE FOR RESIDUE CL B1059
6
AC6
SOFTWARE
ARG A:77 , NO3 A:1145 , HOH A:2073
BINDING SITE FOR RESIDUE EDO A1147
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: CLOS_CELLULOSOME_RPT ()
2: EF_HAND_1 ()
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLOS_CELLULOSOME_RPT
PS00448
Clostridium cellulosome enzymes repeated domain signature.
XYNY_CLOTM
734-753
768-787
6
B:2-21
B:36-55
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
XYNY_CLOTM
734-746
768-780
6
B:2-14
B:36-48
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ohzb_ (B:)
2a: SCOP_d1ohza_ (A:)
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Protein Domains
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)
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)
Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Type I dockerin domain
(11)
Superfamily
:
Type I dockerin domain
(11)
Family
:
Type I dockerin domain
(6)
Protein domain
:
Endo-1,4-beta-xylanase Y
(2)
Clostridium thermocellum [TaxId: 1515]
(2)
1a
d1ohzb_
B:
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Cohesin domain
(6)
Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]
(4)
2a
d1ohza_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ohzA00 (A:5-144)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.680, no name defined]
(14)
Clostridium thermocellum. Organism_taxid: 1515.
(2)
1a
1ohzA00
A:5-144
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_Cohesin_1ohzA01 (A:6-143)
2a: PFAM_Dockerin_1_1ohzB01 (B:36-56)
2b: PFAM_Dockerin_1_1ohzB02 (B:36-56)
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Clans
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Clan
:
CBD
(21)
Family
:
Cohesin
(6)
Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
(2)
1a
Cohesin-1ohzA01
A:6-143
Clan
:
EF_hand
(270)
Family
:
Dockerin_1
(3)
Clostridium thermocellum
(1)
2a
Dockerin_1-1ohzB01
B:36-56
2b
Dockerin_1-1ohzB02
B:36-56
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