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1OGP
Biol. Unit 3
Info
Asym.Unit (396 KB)
Biol.Unit 1 (134 KB)
Biol.Unit 2 (133 KB)
Biol.Unit 3 (134 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF PLANT SULFITE OXIDASE PROVIDES INSIGHT INTO SULFITE OXIDATION IN PLANTS AND ANIMALS
Authors
:
N. Schrader, K. Fischer, K. Theis, R. R. Mendel, G. Schwarz, C. Kisker
Date
:
08 May 03 (Deposition) - 09 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Oxidoreductase, Molybdenum Cofactor, Molybdopterin, Plant Sulfite Oxidase, Peroxisomes, Intramolecular Electron Transfer, Oxidoreductas
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Schrader, K. Fischer, K. Theis, R. R. Mendel, G. Schwarz, C. Kisker
The Crystal Structure Of Plant Sulfite Oxidase Provides Insights Into Sulfite Oxidation In Plants And Animals
Structure V. 11 1251 2003
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CESIUM ION (CSa)
1b: CESIUM ION (CSb)
1c: CESIUM ION (CSc)
1d: CESIUM ION (CSd)
1e: CESIUM ION (CSe)
1f: CESIUM ION (CSf)
1g: CESIUM ION (CSg)
1h: CESIUM ION (CSh)
1i: CESIUM ION (CSi)
1j: CESIUM ION (CSj)
1k: CESIUM ION (CSk)
1l: CESIUM ION (CSl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: (MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOL... (MTQa)
3b: (MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOL... (MTQb)
3c: (MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOL... (MTQc)
3d: (MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOL... (MTQd)
3e: (MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOL... (MTQe)
3f: (MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOL... (MTQf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CS
-1
Ligand/Ion
CESIUM ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MTQ
2
Ligand/Ion
(MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOLYBDENUM(VI)
[
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Sites
(8, 8)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
5: BC8 (SOFTWARE)
6: BC9 (SOFTWARE)
7: CC5 (SOFTWARE)
8: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
SER E:66 , THR E:68 , ASP E:223
BINDING SITE FOR RESIDUE CS E1391
2
BC1
SOFTWARE
SER E:329 , SER E:330 , SER E:331 , ASP E:332
BINDING SITE FOR RESIDUE CS E1392
3
BC2
SOFTWARE
SER F:66 , THR F:68 , ASP F:223
BINDING SITE FOR RESIDUE CS F1391
4
BC3
SOFTWARE
SER F:329 , SER F:330 , SER F:331 , ASP F:332 , HOH F:2082
BINDING SITE FOR RESIDUE CS F1392
5
BC8
SOFTWARE
TYR E:49 , ARG E:51 , HIS E:53 , CYS E:98 , ALA E:99 , SER E:159 , ASP E:161 , TYR E:171 , HIS E:202 , ARG E:207 , GLY E:215 , ALA E:216 , SER E:218 , LYS E:220 , TRP E:221 , TYR E:241
BINDING SITE FOR RESIDUE MTQ E1394
6
BC9
SOFTWARE
PHE F:48 , TYR F:49 , LYS F:50 , ARG F:51 , HIS F:53 , CYS F:98 , ALA F:99 , SER F:159 , ASP F:161 , TYR F:171 , HIS F:202 , ARG F:207 , GLY F:215 , ALA F:216 , SER F:218 , VAL F:219 , LYS F:220 , TRP F:221 , TYR F:241 , HOH F:2111
BINDING SITE FOR RESIDUE MTQ F1394
7
CC5
SOFTWARE
HIS E:154 , SER E:174 , ILE E:175 , THR E:176 , GLU E:231 , ARG E:259 , HOH E:2107
BINDING SITE FOR RESIDUE GOL E1393
8
CC6
SOFTWARE
HIS F:154 , SER F:174 , ILE F:175 , THR F:176 , GLU F:231 , ARG F:259
BINDING SITE FOR RESIDUE GOL F1393
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1ogpa1 (A:263-389)
1b: SCOP_d1ogpb1 (B:263-389)
1c: SCOP_d1ogpc1 (C:263-389)
1d: SCOP_d1ogpd1 (D:263-389)
1e: SCOP_d1ogpe1 (E:263-389)
1f: SCOP_d1ogpf1 (F:263-389)
2a: SCOP_d1ogpa2 (A:2-262)
2b: SCOP_d1ogpb2 (B:2-262)
2c: SCOP_d1ogpc2 (C:2-262)
2d: SCOP_d1ogpd2 (D:2-262)
2e: SCOP_d1ogpe2 (E:2-262)
2f: SCOP_d1ogpf2 (F:2-262)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Molybdenum-containing oxidoreductases-like dimerisation domain
(7)
Protein domain
:
Sulfite oxidase, C-terminal domain
(7)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(1)
1a
d1ogpa1
A:263-389
1b
d1ogpb1
B:263-389
1c
d1ogpc1
C:263-389
1d
d1ogpd1
D:263-389
1e
d1ogpe1
E:263-389
1f
d1ogpf1
F:263-389
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Oxidoreductase molybdopterin-binding domain
(15)
Superfamily
:
Oxidoreductase molybdopterin-binding domain
(15)
Family
:
Oxidoreductase molybdopterin-binding domain
(9)
Protein domain
:
Sulfite oxidase, middle catalytic domain
(7)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(1)
2a
d1ogpa2
A:2-262
2b
d1ogpb2
B:2-262
2c
d1ogpc2
C:2-262
2d
d1ogpd2
D:2-262
2e
d1ogpe2
E:2-262
2f
d1ogpf2
F:2-262
[
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]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1ogpA01 (A:2-262)
1b: CATH_1ogpB01 (B:2-262)
1c: CATH_1ogpC01 (C:2-262)
1d: CATH_1ogpD01 (D:2-262)
1e: CATH_1ogpE01 (E:2-262)
1f: CATH_1ogpF01 (F:2-262)
2a: CATH_1ogpA02 (A:263-389)
2b: CATH_1ogpB02 (B:263-389)
2c: CATH_1ogpC02 (C:263-389)
2d: CATH_1ogpD02 (D:263-389)
2e: CATH_1ogpE02 (E:263-389)
2f: CATH_1ogpF02 (F:263-389)
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Sulfite Oxidase; Chain A, domain 2
(11)
Homologous Superfamily
:
Sulfite Oxidase; Chain A, domain 2
(11)
Mouse-ear cress (Arabidopsis thaliana)
(1)
1a
1ogpA01
A:2-262
1b
1ogpB01
B:2-262
1c
1ogpC01
C:2-262
1d
1ogpD01
D:2-262
1e
1ogpE01
E:2-262
1f
1ogpF01
F:2-262
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.650, no name defined]
(9)
Mouse-ear cress (Arabidopsis thaliana)
(1)
2a
1ogpA02
A:263-389
2b
1ogpB02
B:263-389
2c
1ogpC02
C:263-389
2d
1ogpD02
D:263-389
2e
1ogpE02
E:263-389
2f
1ogpF02
F:263-389
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Mo_co_dimer_1ogpF01 (F:258-388)
1b: PFAM_Mo_co_dimer_1ogpF02 (F:258-388)
1c: PFAM_Mo_co_dimer_1ogpF03 (F:258-388)
1d: PFAM_Mo_co_dimer_1ogpF04 (F:258-388)
1e: PFAM_Mo_co_dimer_1ogpF05 (F:258-388)
1f: PFAM_Mo_co_dimer_1ogpF06 (F:258-388)
2a: PFAM_Oxidored_molyb_1ogpF07 (F:51-238)
2b: PFAM_Oxidored_molyb_1ogpF08 (F:51-238)
2c: PFAM_Oxidored_molyb_1ogpF09 (F:51-238)
2d: PFAM_Oxidored_molyb_1ogpF10 (F:51-238)
2e: PFAM_Oxidored_molyb_1ogpF11 (F:51-238)
2f: PFAM_Oxidored_molyb_1ogpF12 (F:51-238)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Mo-co_dimer
(3)
Arabidopsis thaliana (Mouse-ear cress)
(1)
1a
Mo-co_dimer-1ogpF01
F:258-388
1b
Mo-co_dimer-1ogpF02
F:258-388
1c
Mo-co_dimer-1ogpF03
F:258-388
1d
Mo-co_dimer-1ogpF04
F:258-388
1e
Mo-co_dimer-1ogpF05
F:258-388
1f
Mo-co_dimer-1ogpF06
F:258-388
Clan
:
no clan defined [family: Oxidored_molyb]
(3)
Family
:
Oxidored_molyb
(3)
Arabidopsis thaliana (Mouse-ear cress)
(1)
2a
Oxidored_molyb-1ogpF07
F:51-238
2b
Oxidored_molyb-1ogpF08
F:51-238
2c
Oxidored_molyb-1ogpF09
F:51-238
2d
Oxidored_molyb-1ogpF10
F:51-238
2e
Oxidored_molyb-1ogpF11
F:51-238
2f
Oxidored_molyb-1ogpF12
F:51-238
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