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1OFG
Asym. Unit
Info
Asym.Unit (380 KB)
Biol.Unit 1 (251 KB)
Biol.Unit 2 (252 KB)
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(1)
Title
:
GLUCOSE-FRUCTOSE OXIDOREDUCTASE
Authors
:
R. L. Kingston, R. K. Scopes, E. N. Baker
Date
:
17 Oct 96 (Deposition) - 21 Apr 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F (2x)
Keywords
:
Nadp Binding, Osmotic Protection, Oxidoreductase, Periplasm
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. L. Kingston, R. K. Scopes, E. N. Baker
The Structure Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis: An Osmoprotective Periplasmic Enzyme Containing Non-Dissociable Nadp.
Structure V. 4 1413 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
1c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
1d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
1e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
1f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NDP
6
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:38 , LEU A:39 , GLY A:40 , LYS A:41 , TYR A:42 , SER A:64 , GLY A:65 , LYS A:69 , TYR A:87 , ILE A:105 , LEU A:106 , PRO A:107 , ASN A:108 , LEU A:110 , HIS A:111 , GLU A:128 , LYS A:129 , GLY A:155 , ARG A:157 , ALA A:196 , TRP A:199 , ARG A:200 , TYR A:217 , TYR A:296 , HOH A:501 , HOH A:505 , HOH A:514 , HOH A:517 , HOH A:522 , HOH A:546 , HOH A:598 , HOH A:599 , VAL D:10 , PRO D:11 , THR D:13 , PRO D:14 , ALA D:15 , GLY D:16 , ARG D:17
BINDING SITE FOR RESIDUE NDP A 500
2
AC2
SOFTWARE
GLY B:38 , LEU B:39 , GLY B:40 , LYS B:41 , TYR B:42 , SER B:64 , GLY B:65 , LYS B:69 , TYR B:87 , ILE B:105 , LEU B:106 , PRO B:107 , ASN B:108 , LEU B:110 , HIS B:111 , GLU B:128 , LYS B:129 , GLY B:155 , ARG B:157 , ALA B:196 , TRP B:199 , ARG B:200 , TYR B:217 , TYR B:296 , HOH B:508 , HOH B:513 , HOH B:521 , HOH B:524 , HOH B:529 , HOH B:554 , HOH B:606 , HOH B:607 , VAL C:10 , PRO C:11 , THR C:13 , PRO C:14 , ALA C:15 , GLY C:16 , ARG C:17
BINDING SITE FOR RESIDUE NDP B 500
3
AC3
SOFTWARE
VAL B:10 , PRO B:11 , THR B:13 , PRO B:14 , ALA B:15 , GLY B:16 , ARG B:17 , GLY C:38 , LEU C:39 , GLY C:40 , LYS C:41 , TYR C:42 , SER C:64 , GLY C:65 , LYS C:69 , TYR C:87 , ILE C:105 , LEU C:106 , PRO C:107 , ASN C:108 , LEU C:110 , HIS C:111 , GLU C:128 , LYS C:129 , GLY C:155 , ARG C:157 , ALA C:196 , TRP C:199 , ARG C:200 , TYR C:217 , TYR C:296 , HOH C:518 , HOH C:523 , HOH C:531 , HOH C:534 , HOH C:539 , HOH C:564 , HOH C:615 , HOH C:616
BINDING SITE FOR RESIDUE NDP C 500
4
AC4
SOFTWARE
VAL A:10 , PRO A:11 , THR A:13 , PRO A:14 , ALA A:15 , GLY A:16 , ARG A:17 , GLY D:38 , LEU D:39 , GLY D:40 , LYS D:41 , TYR D:42 , SER D:64 , GLY D:65 , LYS D:69 , TYR D:87 , ILE D:105 , LEU D:106 , PRO D:107 , ASN D:108 , LEU D:110 , HIS D:111 , GLU D:128 , LYS D:129 , GLY D:155 , ARG D:157 , ALA D:196 , TRP D:199 , ARG D:200 , TYR D:217 , TYR D:296 , HOH D:526 , HOH D:530 , HOH D:539 , HOH D:542 , HOH D:547 , HOH D:571 , HOH D:622 , HOH D:623
BINDING SITE FOR RESIDUE NDP D 500
5
AC5
SOFTWARE
VAL E:10 , PRO E:11 , THR E:13 , PRO E:14 , ALA E:15 , GLY E:16 , ARG E:17 , GLY E:38 , LEU E:39 , GLY E:40 , LYS E:41 , TYR E:42 , SER E:64 , GLY E:65 , LYS E:69 , TYR E:87 , ILE E:105 , LEU E:106 , PRO E:107 , ASN E:108 , LEU E:110 , HIS E:111 , GLU E:128 , LYS E:129 , GLY E:155 , ARG E:157 , ALA E:196 , TRP E:199 , ARG E:200 , TYR E:217 , TYR E:296 , HOH E:561 , HOH E:566 , HOH E:575 , HOH E:578 , HOH E:583 , HOH E:620 , HOH E:683 , HOH E:684
BINDING SITE FOR RESIDUE NDP E 500
6
AC6
SOFTWARE
VAL F:10 , PRO F:11 , THR F:13 , PRO F:14 , ALA F:15 , GLY F:16 , ARG F:17 , GLY F:38 , LEU F:39 , GLY F:40 , LYS F:41 , TYR F:42 , SER F:64 , GLY F:65 , LYS F:69 , TYR F:87 , ILE F:105 , LEU F:106 , PRO F:107 , ASN F:108 , LEU F:110 , HIS F:111 , GLU F:128 , LYS F:129 , GLY F:155 , ARG F:157 , ALA F:196 , TRP F:199 , ARG F:200 , TYR F:217 , TYR F:296 , HOH F:701 , HOH F:706 , HOH F:715 , HOH F:718 , HOH F:723 , HOH F:760 , HOH F:823 , HOH F:824
BINDING SITE FOR RESIDUE NDP F 500
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1ofga2 (A:161-322)
1b: SCOP_d1ofgb2 (B:161-322)
1c: SCOP_d1ofgc2 (C:161-322)
1d: SCOP_d1ofgd2 (D:161-322)
1e: SCOP_d1ofge2 (E:161-322)
1f: SCOP_d1ofgf2 (F:161-322)
2a: SCOP_d1ofga1 (A:1-160,A:323-381)
2b: SCOP_d1ofgb1 (B:1-160,B:323-381)
2c: SCOP_d1ofgc1 (C:1-160,C:323-381)
2d: SCOP_d1ofgd1 (D:1-160,D:323-381)
2e: SCOP_d1ofge1 (E:1-160,E:323-381)
2f: SCOP_d1ofgf1 (F:1-160,F:323-381)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
Glucose 6-phosphate dehydrogenase-like
(25)
Protein domain
:
Glucose-fructose oxidoreductase
(8)
Zymomonas mobilis [TaxId: 542]
(8)
1a
d1ofga2
A:161-322
1b
d1ofgb2
B:161-322
1c
d1ofgc2
C:161-322
1d
d1ofgd2
D:161-322
1e
d1ofge2
E:161-322
1f
d1ofgf2
F:161-322
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glucose-fructose oxidoreductase, N-terminal domain
(8)
Zymomonas mobilis [TaxId: 542]
(8)
2a
d1ofga1
A:1-160,A:323-381
2b
d1ofgb1
B:1-160,B:323-381
2c
d1ofgc1
C:1-160,C:323-381
2d
d1ofgd1
D:1-160,D:323-381
2e
d1ofge1
E:1-160,E:323-381
2f
d1ofgf1
F:1-160,F:323-381
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1ofgA02 (A:161-314,A:346-381)
1b: CATH_1ofgB02 (B:161-314,B:346-381)
1c: CATH_1ofgC02 (C:161-314,C:346-381)
1d: CATH_1ofgD02 (D:161-314,D:346-381)
1e: CATH_1ofgE02 (E:161-314,E:346-381)
1f: CATH_1ofgF02 (F:161-314,F:346-381)
2a: CATH_1ofgA01 (A:22-160,A:315-345)
2b: CATH_1ofgB01 (B:22-160,B:315-345)
2c: CATH_1ofgC01 (C:22-160,C:315-345)
2d: CATH_1ofgD01 (D:22-160,D:315-345)
2e: CATH_1ofgE01 (E:22-160,E:315-345)
2f: CATH_1ofgF01 (F:22-160,F:315-345)
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)
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Zymomonas mobilis. Organism_taxid: 542.
(1)
1a
1ofgA02
A:161-314,A:346-381
1b
1ofgB02
B:161-314,B:346-381
1c
1ofgC02
C:161-314,C:346-381
1d
1ofgD02
D:161-314,D:346-381
1e
1ofgE02
E:161-314,E:346-381
1f
1ofgF02
F:161-314,F:346-381
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Zymomonas mobilis. Organism_taxid: 542.
(3)
2a
1ofgA01
A:22-160,A:315-345
2b
1ofgB01
B:22-160,B:315-345
2c
1ofgC01
C:22-160,C:315-345
2d
1ofgD01
D:22-160,D:315-345
2e
1ofgE01
E:22-160,E:315-345
2f
1ofgF01
F:22-160,F:315-345
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_GFO_IDH_MocA_1ofgF01 (F:32-156)
1b: PFAM_GFO_IDH_MocA_1ofgF02 (F:32-156)
1c: PFAM_GFO_IDH_MocA_1ofgF03 (F:32-156)
1d: PFAM_GFO_IDH_MocA_1ofgF04 (F:32-156)
1e: PFAM_GFO_IDH_MocA_1ofgF05 (F:32-156)
1f: PFAM_GFO_IDH_MocA_1ofgF06 (F:32-156)
2a: PFAM_GFO_IDH_MocA_C_1ofgF07 (F:168-282)
2b: PFAM_GFO_IDH_MocA_C_1ofgF08 (F:168-282)
2c: PFAM_GFO_IDH_MocA_C_1ofgF09 (F:168-282)
2d: PFAM_GFO_IDH_MocA_C_1ofgF10 (F:168-282)
2e: PFAM_GFO_IDH_MocA_C_1ofgF11 (F:168-282)
2f: PFAM_GFO_IDH_MocA_C_1ofgF12 (F:168-282)
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)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
GFO_IDH_MocA
(25)
Zymomonas mobilis
(3)
1a
GFO_IDH_MocA-1ofgF01
F:32-156
1b
GFO_IDH_MocA-1ofgF02
F:32-156
1c
GFO_IDH_MocA-1ofgF03
F:32-156
1d
GFO_IDH_MocA-1ofgF04
F:32-156
1e
GFO_IDH_MocA-1ofgF05
F:32-156
1f
GFO_IDH_MocA-1ofgF06
F:32-156
Clan
:
ox_reductase_C
(19)
Family
:
GFO_IDH_MocA_C
(19)
Zymomonas mobilis
(3)
2a
GFO_IDH_MocA_C-1ofgF07
F:168-282
2b
GFO_IDH_MocA_C-1ofgF08
F:168-282
2c
GFO_IDH_MocA_C-1ofgF09
F:168-282
2d
GFO_IDH_MocA_C-1ofgF10
F:168-282
2e
GFO_IDH_MocA_C-1ofgF11
F:168-282
2f
GFO_IDH_MocA_C-1ofgF12
F:168-282
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