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1OA1
Asym. Unit
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Biol.Unit 1 (105 KB)
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(1)
Title
:
REDUCED HYBRID CLUSTER PROTEIN (HCP) FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH STRUCTURE AT 1.55A RESOLUTION USING SYNCHROTRON RADIATION.
Authors
:
D. Aragao, S. Macedo, E. P. Mitchell, C. V. Romao, M. Y. Liu, C. Frazao, L. M. Saraiva, A. V. Xavier, J. Legall, W. M. A. M. Van Dongen, W. R. Hagen, M. Teixeira, M. A. Carrondo, P. F. Lindley
Date
:
23 Dec 02 (Deposition) - 08 Apr 03 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Reduced Forms
(Keyword Search:
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Reference
:
D. Aragao, S. Macedo, E. P. Mitchell, C. V. Romao, M. Y. Liu, C. Frazao, L. M. Saraiva, A. V. Xavier, J. Legall, W. M. A. M. Van Dongen, W. R. Hagen, M. Teixeira, M. A. Carrondo, P. F. Lindley
Reduced Hybrid Cluster Proteins (Hcp) From Desulfovibrio Desulfuricans Atcc 27774 And Desulfovibrio Vulgaris (Hildenborough): X-Ray Structures At High Resolution Using Synchrotron Radiation
J. Biol. Inorg. Chem. V. 8 540 2003
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: FE4-S3 CLUSTER (SF3a)
3a: IRON/SULFUR CLUSTER (SF4a)
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No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SF3
1
Ligand/Ion
FE4-S3 CLUSTER
3
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:3 , PHE A:4 , GLN A:5 , CYS A:6 , THR A:9 , CYS A:15 , GLY A:19 , MET A:20 , CYS A:21 , LYS A:23 , THR A:71
BINDING SITE FOR RESIDUE SF4 A1554
2
AC2
SOFTWARE
HIS A:244 , GLU A:268 , TRP A:292 , CYS A:312 , CYS A:406 , CYS A:434 , CYS A:459 , GLU A:494 , HOH A:2767
BINDING SITE FOR RESIDUE SF3 A1555
3
AC3
SOFTWARE
ASN A:273 , LYS A:279 , TYR A:281 , PHE A:284 , VAL A:285 , HOH A:2817
BINDING SITE FOR RESIDUE GOL A1556
4
AC4
SOFTWARE
GLY A:14 , CYS A:15 , THR A:16 , VAL A:17 , LYS A:18 , HOH A:2818
BINDING SITE FOR RESIDUE GOL A1557
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1oa1a_ (A:)
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)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Prismane protein-like
(31)
Superfamily
:
Prismane protein-like
(31)
Family
:
Hybrid cluster protein (prismane protein)
(10)
Protein domain
:
Hybrid cluster protein (prismane protein)
(9)
Desulfovibrio vulgaris [TaxId: 881]
(5)
1a
d1oa1a_
A:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1oa1A04 (A:378-550)
1b: CATH_1oa1A03 (A:225-375)
2a: CATH_1oa1A01 (A:1-139)
2b: CATH_1oa1A02 (A:140-223)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2030, no name defined]
(25)
Desulfovibrio vulgaris. Organism_taxid: 881. Strain: hildenborough ncimb8303.
(3)
1a
1oa1A04
A:378-550
1b
1oa1A03
A:225-375
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
[code=1.20.1270.20, no name defined]
(10)
Desulfovibrio vulgaris. Organism_taxid: 881. Strain: hildenborough ncimb8303.
(3)
2a
1oa1A01
A:1-139
2b
1oa1A02
A:140-223
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Prismane_1oa1A01 (A:1-550)
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Clan
:
no clan defined [family: Prismane]
(9)
Family
:
Prismane
(9)
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)
(2)
1a
Prismane-1oa1A01
A:1-550
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Asymmetric Unit 1
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