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1OA0
Asym. Unit
Info
Asym.Unit (220 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (108 KB)
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(1)
Title
:
REDUCED HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS X-RAY STRUCTURE AT 1.25A RESOLUTION
Authors
:
S. Macedo, D. Aragao, E. P. Mitchell, C. V. Romao, M. Y. Liu, C. Frazao, L. M. Saraiva, A. V. Xavier, J. Legall, W. M. A. M. Van Dongen, W. R. Hagen, M. Teixeira, M. A. Carrondo, P. F. Lindley
Date
:
23 Dec 02 (Deposition) - 08 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hybrid Cluster Protein, Hybrid Cluster, Desulfovibrio Desulfuricans, Reduced Forms, High-Resolution
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. Aragao, S. Macedo, E. P. Mitchell, C. V. Romao, M. Y. Liu, C. Frazao, L. M. Saraiva, A. V. Xavier, J. Legall, W. M. A. M. Van Dongen, W. R. Hagen, M. Teixeira, M. A. Carrondo, P. F. Lindley
Reduced Hybrid Cluster Proteins (Hcp) From Desulfovibrio Desulfuricans Atcc 27774 And Desulfovibrio Vulgaris (Hildenborough): X-Ray Structures At High Resolution Using Synchrotron Radiation
J. Biol. Inorg. Chem. V. 8 540 2003
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2a: FE4-S3 CLUSTER (SF3a)
2b: FE4-S3 CLUSTER (SF3b)
3a: IRON/SULFUR CLUSTER (SF4a)
3b: IRON/SULFUR CLUSTER (SF4b)
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No.
Name
Count
Type
Full Name
1
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
SF3
2
Ligand/Ion
FE4-S3 CLUSTER
3
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:6 , TYR A:7 , GLN A:8 , CYS A:9 , THR A:12 , CYS A:18 , GLY A:22 , VAL A:23 , CYS A:24 , LYS A:26 , THR A:75
BINDING SITE FOR RESIDUE SF4 A 600
2
AC2
SOFTWARE
HIS A:240 , GLU A:264 , TRP A:288 , CYS A:308 , CYS A:399 , CYS A:427 , CYS A:452 , GLU A:487
BINDING SITE FOR RESIDUE SF3 A 601
3
AC3
SOFTWARE
ILE A:227 , SER A:362 , GLU A:364 , LYS A:434 , HOH A:2954 , HOH A:3175 , HOH A:3176 , HOH A:3177 , LYS B:313 , ASP B:314
BINDING SITE FOR RESIDUE MES A 602
4
AC4
SOFTWARE
CYS B:6 , TYR B:7 , GLN B:8 , CYS B:9 , THR B:12 , CYS B:18 , GLY B:22 , VAL B:23 , CYS B:24 , LYS B:26 , THR B:75
BINDING SITE FOR RESIDUE SF4 B1544
5
AC5
SOFTWARE
HIS B:240 , GLU B:264 , TRP B:288 , CYS B:308 , CYS B:399 , CYS B:427 , CYS B:452 , GLU B:487
BINDING SITE FOR RESIDUE SF3 B1545
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1oa0a_ (A:)
1b: SCOP_d1oa0b_ (B:)
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Protein Domains
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Prismane protein-like
(31)
Superfamily
:
Prismane protein-like
(31)
Family
:
Hybrid cluster protein (prismane protein)
(10)
Protein domain
:
Hybrid cluster protein (prismane protein)
(9)
Desulfovibrio desulfuricans [TaxId: 876]
(4)
1a
d1oa0a_
A:
1b
d1oa0b_
B:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1oa0A04 (A:378-543)
1b: CATH_1oa0A03 (A:225-375)
1c: CATH_1oa0B03 (B:225-375)
1d: CATH_1oa0B04 (B:378-543)
2a: CATH_1oa0A01 (A:1-139)
2b: CATH_1oa0A02 (A:140-223)
2c: CATH_1oa0B02 (B:140-223)
2d: CATH_1oa0B01 (B:1-139)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2030, no name defined]
(25)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(4)
1a
1oa0A04
A:378-543
1b
1oa0A03
A:225-375
1c
1oa0B03
B:225-375
1d
1oa0B04
B:378-543
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
[code=1.20.1270.20, no name defined]
(10)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(4)
2a
1oa0A01
A:1-139
2b
1oa0A02
A:140-223
2c
1oa0B02
B:140-223
2d
1oa0B01
B:1-139
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Prismane_1oa0B01 (B:4-543)
1b: PFAM_Prismane_1oa0B02 (B:4-543)
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Clan
:
no clan defined [family: Prismane]
(9)
Family
:
Prismane
(9)
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949)
(2)
1a
Prismane-1oa0B01
B:4-543
1b
Prismane-1oa0B02
B:4-543
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Asym.Unit (220 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (108 KB)
Header - Biol.Unit 2
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