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1O7L
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
MOLYBDATE-ACTIVATED FORM OF MODE FROM ESCHERICHIA COLI
Authors
:
A. W. Schuttelkopf, W. N. Hunter
Date
:
08 Nov 02 (Deposition) - 20 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transcription Regulation, Dna Binding, Molybdate, Mop, Winged Helix-Turn-Helix, Transcriptional Regulator, Activator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. W. Schuttelkopf, D. H. Boxer, W. N. Hunter
Crystal Structure Of Activated Mode Reveals Conformational Changes Involving Both Oxyanion And Dna-Binding Domains
J. Mol. Biol. V. 326 761 2003
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: CHLORIDE ION (CLa)
3a: MOLYBDATE ION (MOOa)
3b: MOLYBDATE ION (MOOb)
3c: MOLYBDATE ION (MOOc)
3d: MOLYBDATE ION (MOOd)
3e: MOLYBDATE ION (MOOe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
MOO
5
Ligand/Ion
MOLYBDATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA B:214
BINDING SITE FOR RESIDUE CL B1264
2
AC2
SOFTWARE
GLU C:215 , ASP D:141 , GLN D:144 , MOO D:1264 , HOH D:2004
BINDING SITE FOR RESIDUE CA D1265
3
AC3
SOFTWARE
SER A:126 , ALA A:127 , ARG A:128 , LYS A:183 , ALA A:184 , PRO A:185 , THR B:163 , SER B:166
BINDING SITE FOR RESIDUE MOO A1263
4
AC4
SOFTWARE
THR A:163 , SER A:166 , SER B:126 , ALA B:127 , ARG B:128 , LYS B:183 , ALA B:184 , PRO B:185
BINDING SITE FOR RESIDUE MOO B1263
5
AC5
SOFTWARE
SER C:126 , ALA C:127 , ARG C:128 , LYS C:183 , ALA C:184 , PRO C:185 , ILE D:162 , THR D:163 , SER D:166
BINDING SITE FOR RESIDUE MOO C1262
6
AC6
SOFTWARE
ILE C:162 , THR C:163 , SER C:166 , SER D:126 , ALA D:127 , ARG D:128 , LYS D:183 , ALA D:184 , PRO D:185
BINDING SITE FOR RESIDUE MOO D1263
7
AC7
SOFTWARE
HIS B:140 , GLY C:213 , ALA C:214 , GLN C:216 , ASP D:141 , ASP D:142 , VAL D:143 , GLN D:144 , CA D:1265
BINDING SITE FOR RESIDUE MOO D1264
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1o7la1 (A:1-126)
1b: SCOP_d1o7lb1 (B:1-126)
1c: SCOP_d1o7lc1 (C:2-126)
1d: SCOP_d1o7ld1 (D:2-126)
2a: SCOP_d1o7la2 (A:127-199)
2b: SCOP_d1o7la3 (A:200-262)
2c: SCOP_d1o7lb2 (B:127-199)
2d: SCOP_d1o7lb3 (B:200-262)
2e: SCOP_d1o7lc2 (C:127-199)
2f: SCOP_d1o7lc3 (C:200-261)
2g: SCOP_d1o7ld2 (D:127-199)
2h: SCOP_d1o7ld3 (D:200-262)
View:
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
N-terminal domain of molybdate-dependent transcriptional regulator ModE
(3)
Protein domain
:
N-terminal domain of molybdate-dependent transcriptional regulator ModE
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1o7la1
A:1-126
1b
d1o7lb1
B:1-126
1c
d1o7lc1
C:2-126
1d
d1o7ld1
D:2-126
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
BiMOP, duplicated molybdate-binding domain
(8)
Protein domain
:
C-terminal domain of molybdate-dependent transcriptional regulator ModE
(5)
Escherichia coli [TaxId: 562]
(5)
2a
d1o7la2
A:127-199
2b
d1o7la3
A:200-262
2c
d1o7lb2
B:127-199
2d
d1o7lb3
B:200-262
2e
d1o7lc2
C:127-199
2f
d1o7lc3
C:200-261
2g
d1o7ld2
D:127-199
2h
d1o7ld3
D:200-262
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1o7lD01 (D:2-110)
1b: CATH_1o7lB01 (B:1-110)
1c: CATH_1o7lC01 (C:2-110)
1d: CATH_1o7lA01 (A:1-110)
2a: CATH_1o7lC02 (C:111-181,C:253-260)
2b: CATH_1o7lA03 (A:182-252)
2c: CATH_1o7lB03 (B:182-252)
2d: CATH_1o7lC03 (C:182-252)
2e: CATH_1o7lD03 (D:182-252)
2f: CATH_1o7lA02 (A:111-181,A:253-261)
2g: CATH_1o7lB02 (B:111-181,B:253-261)
2h: CATH_1o7lD02 (D:111-181,D:253-261)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Escherichia coli. Organism_taxid: 562.
(15)
1a
1o7lD01
D:2-110
1b
1o7lB01
B:1-110
1c
1o7lC01
C:2-110
1d
1o7lA01
A:1-110
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Escherichia coli. Organism_taxid: 562.
(5)
2a
1o7lC02
C:111-181,C:253-260
2b
1o7lA03
A:182-252
2c
1o7lB03
B:182-252
2d
1o7lC03
C:182-252
2e
1o7lD03
D:182-252
2f
1o7lA02
A:111-181,A:253-261
2g
1o7lB02
B:111-181,B:253-261
2h
1o7lD02
D:111-181,D:253-261
[
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_HTH_1_1o7lD01 (D:19-83)
1b: PFAM_HTH_1_1o7lD02 (D:19-83)
1c: PFAM_HTH_1_1o7lD03 (D:19-83)
1d: PFAM_HTH_1_1o7lD04 (D:19-83)
2a: PFAM_TOBE_1o7lD05 (D:197-258)
2b: PFAM_TOBE_1o7lD06 (D:197-258)
2c: PFAM_TOBE_1o7lD07 (D:197-258)
2d: PFAM_TOBE_1o7lD08 (D:197-258)
2e: PFAM_TOBE_1o7lD09 (D:197-258)
2f: PFAM_TOBE_1o7lD10 (D:197-258)
2g: PFAM_TOBE_1o7lD11 (D:197-258)
2h: PFAM_TOBE_1o7lD12 (D:197-258)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
HTH_1
(5)
Escherichia coli (strain K12)
(1)
1a
HTH_1-1o7lD01
D:19-83
1b
HTH_1-1o7lD02
D:19-83
1c
HTH_1-1o7lD03
D:19-83
1d
HTH_1-1o7lD04
D:19-83
Clan
:
OB
(224)
Family
:
TOBE
(1)
Escherichia coli (strain K12)
(1)
2a
TOBE-1o7lD05
D:197-258
2b
TOBE-1o7lD06
D:197-258
2c
TOBE-1o7lD07
D:197-258
2d
TOBE-1o7lD08
D:197-258
2e
TOBE-1o7lD09
D:197-258
2f
TOBE-1o7lD10
D:197-258
2g
TOBE-1o7lD11
D:197-258
2h
TOBE-1o7lD12
D:197-258
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