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1O7B
Asym. Unit
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Asym.Unit (516 KB)
Biol.Unit 1 (28 KB)
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Models
(20 )
Title
:
REFINED SOLUTION STRUCTURE OF THE HUMAN TSG-6 LINK MODULE
Authors
:
C. D. Blundell, P. Teriete, J. D. Kahmann, A. R. Pickford, I. D. Campbell
Date
:
29 Oct 02 (Deposition) - 23 Oct 03 (Release) - 14 Jun 17 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : T (20 x)
Biol. Unit 1: T (1x)
Keywords
:
Hyaluronan-Binding Domain, Carbohydrate-Binding Domain, Link Module, Cell Adhesion, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. Blundell, D. Mahoney, A. Almond, P. Deangelis, J. D. Kahmann, P. Teriete, A. R. Pickford, I. D. Campbell, A. J. Day
The Link Module From Ovulation- And Inflammation-Associated Protein Tsg-6 Changes Conformation On Hyaluronan Binding
J. Biol. Chem. V. 278 49261 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LINK_2 (T:1-94)
2: LINK_1 (T:23-68)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LINK_2
PS50963
Link domain profile.
TSG6_HUMAN
36-129
1
T:1-94
2
LINK_1
PS01241
Link domain signature.
TSG6_HUMAN
58-103
1
T:23-68
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (T:1-43)
Exon 1.3a (T:43-97)
Exon 1.4 (T:97-98)
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3a
3: Boundary 1.3a/1.4
4: Boundary 1.4/1.5a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000243347
1
ENSE00000840475
chr2:
152214106-152214274
169
TSG6_HUMAN
1-32
32
0
-
-
1.2
ENST00000243347
2
ENSE00000840476
chr2:
152220457-152220594
138
TSG6_HUMAN
32-78
47
1
T:1-43
43
1.3a
ENST00000243347
3a
ENSE00000840477
chr2:
152222570-152222731
162
TSG6_HUMAN
78-132
55
1
T:43-97
55
1.4
ENST00000243347
4
ENSE00000840478
chr2:
152226534-152226762
229
TSG6_HUMAN
132-208
77
1
T:97-98
2
1.5a
ENST00000243347
5a
ENSE00000840479
chr2:
152230063-152230103
41
TSG6_HUMAN
208-222
15
0
-
-
1.6
ENST00000243347
6
ENSE00001217763
chr2:
152235878-152236560
683
TSG6_HUMAN
222-277
56
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d1o7bt_ (T:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
Link domain
(9)
Protein domain
:
TSG-6, Link module
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1o7bt_
T:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1o7bT00 (T:1-98)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1o7bT00
T:1-98
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Xlink_1o7bT01 (T:1-93)
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Clan
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C_Lectin
(98)
Family
:
Xlink
(4)
Homo sapiens (Human)
(3)
1a
Xlink-1o7bT01
T:1-93
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Chain T
Asymmetric Unit 1
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Asym.Unit (516 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
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