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1O6U
Asym. Unit
Info
Asym.Unit (213 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (71 KB)
Biol.Unit 3 (72 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN SUPERNATANT PROTEIN FACTOR
Authors
:
A. Stocker, C. Schulze-Briese, T. Tomizaki
Date
:
16 Oct 02 (Deposition) - 17 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,C,E
Biol. Unit 1: A (1x)
Biol. Unit 2: C (1x)
Biol. Unit 3: E (1x)
Keywords
:
Lipid Transfer, Cral_trio, Lipid Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Stocker, T. Tomizaki, C. Schulze-Briese, U. Baumann
Crystal Structure Of Human Supernatant Protein Factor
Structure V. 10 1533 2002
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Hetero Components
(2, 34)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: PALMITIC ACID (PLMa)
2b: PALMITIC ACID (PLMb)
2c: PALMITIC ACID (PLMc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
31
Mod. Amino Acid
SELENOMETHIONINE
2
PLM
3
Ligand/Ion
PALMITIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:153 , HIS A:162 , LEU A:175 , LEU A:189 , ALA A:201
BINDING SITE FOR RESIDUE PLM A1398
2
AC2
SOFTWARE
TYR C:153 , HIS C:162 , LEU C:189 , ALA C:201 , TYR C:202
BINDING SITE FOR RESIDUE PLM C1396
3
AC3
SOFTWARE
ILE E:151 , TYR E:153 , LEU E:175 , LEU E:189 , PHE E:198 , ILE E:205
BINDING SITE FOR RESIDUE PLM E1397
[
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024626 (R11K, chain A/C/E, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024626
R
11
K
S14L2_HUMAN
Polymorphism
757660
A/C/E
R
11
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: CRAL_TRIO (A:76-249,C:76-249,E:76-249)
2: GOLD (A:275-383,C:275-383,E:275-383)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRAL_TRIO
PS50191
CRAL-TRIO lipid binding domain profile.
S14L2_HUMAN
76-249
3
A:76-249
C:76-249
E:76-249
2
GOLD
PS50866
GOLD domain profile.
S14L2_HUMAN
275-383
3
A:275-383
C:275-383
E:275-383
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d1o6ua1 (A:1-75)
1b: SCOP_d1o6uc1 (C:1-75)
1c: SCOP_d1o6ue1 (E:1-75)
2a: SCOP_d1o6ua2 (A:275-398)
2b: SCOP_d1o6uc2 (C:275-396)
2c: SCOP_d1o6ue2 (E:275-397)
3a: SCOP_d1o6ua3 (A:76-274)
3b: SCOP_d1o6uc3 (C:76-274)
3c: SCOP_d1o6ue3 (E:76-274)
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Classes
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Folds
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
RuvA C-terminal domain-like
(106)
Superfamily
:
CRAL/TRIO N-terminal domain
(13)
Family
:
CRAL/TRIO N-terminal domain
(6)
Protein domain
:
Supernatant protein factor (SPF), N-terminal domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1o6ua1
A:1-75
1b
d1o6uc1
C:1-75
1c
d1o6ue1
E:1-75
Class
:
All beta proteins
(24004)
Fold
:
Supernatant protein factor (SPF), C-terminal domain
(2)
Superfamily
:
Supernatant protein factor (SPF), C-terminal domain
(2)
Family
:
Supernatant protein factor (SPF), C-terminal domain
(2)
Protein domain
:
Supernatant protein factor (SPF), C-terminal domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1o6ua2
A:275-398
2b
d1o6uc2
C:275-396
2c
d1o6ue2
E:275-397
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SpoIIaa-like
(27)
Superfamily
:
CRAL/TRIO domain
(13)
Family
:
CRAL/TRIO domain
(8)
Protein domain
:
Supernatant protein factor (SPF), middle domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
3a
d1o6ua3
A:76-274
3b
d1o6uc3
C:76-274
3c
d1o6ue3
E:76-274
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_CRAL_TRIO_1o6uE01 (E:78-244)
1b: PFAM_CRAL_TRIO_1o6uE02 (E:78-244)
1c: PFAM_CRAL_TRIO_1o6uE03 (E:78-244)
2a: PFAM_CRAL_TRIO_N_1o6uE04 (E:13-59)
2b: PFAM_CRAL_TRIO_N_1o6uE05 (E:13-59)
2c: PFAM_CRAL_TRIO_N_1o6uE06 (E:13-59)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
CRAL_TRIO
(6)
Family
:
CRAL_TRIO
(3)
Homo sapiens (Human)
(2)
1a
CRAL_TRIO-1o6uE01
E:78-244
1b
CRAL_TRIO-1o6uE02
E:78-244
1c
CRAL_TRIO-1o6uE03
E:78-244
Clan
:
no clan defined [family: CRAL_TRIO_N]
(3)
Family
:
CRAL_TRIO_N
(3)
Homo sapiens (Human)
(2)
2a
CRAL_TRIO_N-1o6uE04
E:13-59
2b
CRAL_TRIO_N-1o6uE05
E:13-59
2c
CRAL_TRIO_N-1o6uE06
E:13-59
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Asymmetric Unit 1
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Asym.Unit (213 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (71 KB)
Header - Biol.Unit 2
Biol.Unit 3 (72 KB)
Header - Biol.Unit 3
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