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1O0P
Asym. Unit
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Asym.Unit (320 KB)
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Models
(10 )
Title
:
SOLUTION STRUCTURE OF THE THIRD RNA RECOGNITION MOTIF (RRM) OF U2AF65 IN COMPLEX WITH AN N-TERMINAL SF1 PEPTIDE
Authors
:
P. Selenko, G. Gregorovic, R. Sprangers, G. Stier, Z. Rhani, A. Kramer, M. Sattler
Date
:
24 Feb 03 (Deposition) - 06 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (10 x)
Keywords
:
Non-Canonical Rna Recognition Motif, 4-Stranded Anti- Parallel Beta-Sheet, 2 Alpha Helices Additionally Extended By A Third Helix C, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Selenko, G. Gregorovic, R. Sprangers, G. Stier, Z. Rhani, A. Kramer, M. Sattler
Structural Basis For The Molecular Recognition Between Human Splicing Factors U2Af65 And Sf1/Mbbp
Mol. Cell V. 11 965 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (-|-|A:385-466)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
U2AF2_HUMAN
149-231
259-337
385-466
1
-
-
A:385-466
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Exons
(3, 3)
Info
All Exons
Exon 1.11 (A:372-431)
Exon 1.12 (A:432-475)
Exon 2.3a (B:13-25)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10b/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/-
4: Boundary 2.1e/2.3a
5: Boundary 2.3a/2.4a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000308924
1
ENSE00001247615
chr19:
56165416-56166519
1104
U2AF2_HUMAN
1-17
17
0
-
-
1.2
ENST00000308924
2
ENSE00001172989
chr19:
56170576-56170711
136
U2AF2_HUMAN
17-62
46
0
-
-
1.3
ENST00000308924
3
ENSE00000953888
chr19:
56171543-56171587
45
U2AF2_HUMAN
62-77
16
0
-
-
1.4
ENST00000308924
4
ENSE00001172973
chr19:
56171882-56171985
104
U2AF2_HUMAN
77-112
36
0
-
-
1.5
ENST00000308924
5
ENSE00001178740
chr19:
56172404-56172555
152
U2AF2_HUMAN
112-162
51
0
-
-
1.6
ENST00000308924
6
ENSE00001172954
chr19:
56173868-56173984
117
U2AF2_HUMAN
163-201
39
0
-
-
1.7
ENST00000308924
7
ENSE00001172945
chr19:
56174972-56175110
139
U2AF2_HUMAN
202-248
47
0
-
-
1.8
ENST00000308924
8
ENSE00000876731
chr19:
56179873-56179952
80
U2AF2_HUMAN
248-274
27
0
-
-
1.9
ENST00000308924
9
ENSE00001178763
chr19:
56180036-56180158
123
U2AF2_HUMAN
275-315
41
0
-
-
1.10b
ENST00000308924
10b
ENSE00001172923
chr19:
56180449-56180547
99
U2AF2_HUMAN
316-348
33
0
-
-
1.11
ENST00000308924
11
ENSE00001178717
chr19:
56180810-56181058
249
U2AF2_HUMAN
349-431
83
1
A:372-431
60
1.12
ENST00000308924
12
ENSE00001320361
chr19:
56185300-56186081
782
U2AF2_HUMAN
432-475
44
1
A:432-475
44
2.1e
ENST00000377390
1e
ENSE00001875721
chr11:
64546202-64545834
369
SF01_HUMAN
1-11
11
0
-
-
2.3a
ENST00000377390
3a
ENSE00001681285
chr11:
64544098-64543970
129
SF01_HUMAN
11-54
44
1
B:13-25
13
2.4a
ENST00000377390
4a
ENSE00001605002
chr11:
64540977-64540902
76
SF01_HUMAN
54-79
26
0
-
-
2.6d
ENST00000377390
6d
ENSE00001732947
chr11:
64537880-64537728
153
SF01_HUMAN
79-130
52
0
-
-
2.7
ENST00000377390
7
ENSE00001754448
chr11:
64537525-64537436
90
SF01_HUMAN
130-160
31
0
-
-
2.8c
ENST00000377390
8c
ENSE00001781351
chr11:
64537081-64536898
184
SF01_HUMAN
160-221
62
0
-
-
2.9b
ENST00000377390
9b
ENSE00001785757
chr11:
64536810-64536695
116
SF01_HUMAN
222-260
39
0
-
-
2.10a
ENST00000377390
10a
ENSE00001682227
chr11:
64536601-64536494
108
SF01_HUMAN
260-296
37
0
-
-
2.11b
ENST00000377390
11b
ENSE00001711248
chr11:
64535758-64535578
181
SF01_HUMAN
296-356
61
0
-
-
2.12a
ENST00000377390
12a
ENSE00000863666
chr11:
64535316-64535043
274
SF01_HUMAN
357-448
92
0
-
-
2.13b
ENST00000377390
13b
ENSE00001788125
chr11:
64534723-64534664
60
SF01_HUMAN
448-468
21
0
-
-
2.14a
ENST00000377390
14a
ENSE00001645230
chr11:
64534551-64534372
180
SF01_HUMAN
468-528
61
0
-
-
2.15f
ENST00000377390
15f
ENSE00001473768
chr11:
64533627-64532078
1550
SF01_HUMAN
528-639
112
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1o0pa_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Splicing factor U2AF 65 KDa subunit
(8)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1o0pa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1o0pA00 (A:372-475)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1o0pA00
A:372-475
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RRM_1_1o0pA01 (A:399-460)
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Clans
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(
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)
(
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Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-1o0pA01
A:399-460
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