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1NUP
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (151 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NMN/NAMN ADENYLYLTRANSFERASE COMPLEX WITH NMN
Authors
:
X. Zhang, O. V. Kurnasov, S. Karthikeyan, N. V. Grishin, A. L. Osterman,
Date
:
01 Feb 03 (Deposition) - 03 Jun 03 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Nad Biosynthesis, Mitochondria, Pyridine Adenylyltransferase, Enzyme Catalysis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhang, O. V. Kurnasov, S. Karthikeyan, N. V. Grishin, A. L. Osterman H. Zhang
Structural Characterization Of A Human Cytosolic Nmn/Namn Adenylyltransferase And Implication In Human Nad Biosynthesis
J. Biol. Chem. V. 278 13503 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: BETA-NICOTINAMIDE RIBOSE MONOPHOSP... (NMNa)
1b: BETA-NICOTINAMIDE RIBOSE MONOPHOSP... (NMNb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NMN
2
Ligand/Ion
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:95 , ARG A:98 , HIS A:152 , HOH A:663 , HOH A:683
BINDING SITE FOR RESIDUE SO4 A 301
2
AC2
SOFTWARE
LYS A:56 , ALA A:202 , THR A:203 , ARG A:206 , HOH A:524 , HOH A:584 , HOH A:609
BINDING SITE FOR RESIDUE SO4 A 302
3
AC3
SOFTWARE
LYS B:95 , ARG B:98 , LYS B:149 , HIS B:152 , HOH B:691
BINDING SITE FOR RESIDUE SO4 B 303
4
AC4
SOFTWARE
SER B:14 , LYS B:56 , ALA B:202 , THR B:203 , ARG B:206 , NMN B:402 , HOH B:566 , HOH B:611 , HOH B:639
BINDING SITE FOR RESIDUE SO4 B 304
5
AC5
SOFTWARE
CYS A:12 , GLY A:13 , TYR A:53 , TRP A:90 , GLU A:92 , THR A:93 , LEU A:147 , TRP A:148 , HOH A:512 , HOH A:527 , HOH A:532 , HOH A:561 , HOH A:712
BINDING SITE FOR RESIDUE NMN A 401
6
AC6
SOFTWARE
CYS B:12 , GLY B:13 , SER B:14 , VAL B:49 , TYR B:53 , TRP B:90 , GLU B:92 , THR B:93 , LEU B:147 , TRP B:148 , SO4 B:304 , HOH B:503 , HOH B:540 , HOH B:565 , HOH B:568 , HOH B:599
BINDING SITE FOR RESIDUE NMN B 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(4, 8)
Info
All Exons
Exon 1.5a (A:3-37 | B:3-37)
Exon 1.8 (A:37-98 | B:37-98)
Exon 1.10b (A:98-126 (gaps) | B:98-106)
Exon 1.12e (A:126-235 | B:127-234)
View:
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All Exon Boundaries
1: Boundary 1.3/1.5a
2: Boundary 1.5a/1.8
3: Boundary 1.8/1.10b
4: Boundary 1.10b/1.12e
5: Boundary 1.12e/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1g
ENST00000296202
1g
ENSE00002030268
chr3:
139396788-139396547
242
NMNA3_HUMAN
-
0
0
-
-
1.3
ENST00000296202
3
ENSE00001259240
chr3:
139356904-139356805
100
NMNA3_HUMAN
-
0
0
-
-
1.5a
ENST00000296202
5a
ENSE00002150136
chr3:
139346606-139346458
149
NMNA3_HUMAN
1-37
37
2
A:3-37
B:3-37
35
35
1.8
ENST00000296202
8
ENSE00001593512
chr3:
139297897-139297714
184
NMNA3_HUMAN
37-98
62
2
A:37-98
B:37-98
62
62
1.10b
ENST00000296202
10b
ENSE00001788543
chr3:
139292522-139292440
83
NMNA3_HUMAN
98-126
29
2
A:98-126 (gaps)
B:98-106
29
9
1.12e
ENST00000296202
12e
ENSE00002054810
chr3:
139280234-139279424
811
NMNA3_HUMAN
126-252
127
2
A:126-235
B:127-234
110
108
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1nupa_ (A:)
1b: SCOP_d1nupb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Adenylyltransferase
(56)
Protein domain
:
Cytosolic NMN/NAMN adenylyltransferase
(6)
Human (Homo sapiens), FKSG76 [TaxId: 9606]
(6)
1a
d1nupa_
A:
1b
d1nupb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1nupB00 (B:3-234)
1b: CATH_1nupA00 (A:3-235)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Human (Homo sapiens)
(27)
1a
1nupB00
B:3-234
1b
1nupA00
A:3-235
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (82 KB)
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