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1NLT
Asym. Unit
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Asym.Unit (46 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HSP40 YDJ1
Authors
:
J. Li, B. Sha
Date
:
07 Jan 03 (Deposition) - 13 Jan 04 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta-Strands, Chaperone, Heat Shock, Mitochondrion, Protein Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Li, X. Qian, B. Sha
The Crystal Structure Of The Yeast Hsp40 Ydj1 Complexed Wit Its Peptide Substrate.
Structure V. 11 1475 2003
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:143 , GLU A:145 , CYS A:146 , CYS A:201 , CYS A:204
BINDING SITE FOR RESIDUE ZN A 351
2
AC2
SOFTWARE
CYS A:159 , CYS A:162 , CYS A:185 , CYS A:188
BINDING SITE FOR RESIDUE ZN A 352
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_CR (A:130-213)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_CR
PS51188
Zinc finger CR-type profile.
MAS5_YEAST
130-213
1
A:130-213
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:110-337)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YNL064C
1
YNL064C.1
XIV:507099-505870
1230
MAS5_YEAST
1-409
409
1
A:110-337
228
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1nlta1 (A:110-138,A:213-257)
1b: SCOP_d1nlta2 (A:258-337)
2a: SCOP_d1nlta3 (A:139-212)
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Protein Domains
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
HSP40/DnaJ peptide-binding domain
(6)
Superfamily
:
HSP40/DnaJ peptide-binding domain
(6)
Family
:
HSP40/DnaJ peptide-binding domain
(3)
Protein domain
:
Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1nlta1
A:110-138,A:213-257
1b
d1nlta2
A:258-337
Class
:
Small proteins
(3458)
Fold
:
DnaJ/Hsp40 cysteine-rich domain
(2)
Superfamily
:
DnaJ/Hsp40 cysteine-rich domain
(2)
Family
:
DnaJ/Hsp40 cysteine-rich domain
(2)
Protein domain
:
Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
2a
d1nlta3
A:139-212
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1nltA02 (A:143-208)
2a: CATH_1nltA03 (A:256-337)
2b: CATH_1nltA01 (A:110-142,A:209-255)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Chaperone, DNAj Protein; Chain A
(2)
Homologous Superfamily
:
Chaperone, DNAj Protein; Chain
(2)
Baker's yeast (Saccharomyces cerevisiae)
(1)
1a
1nltA02
A:143-208
Architecture
:
Sandwich
(5577)
Topology
:
HSP40/DNAj peptide-binding domain
(12)
Homologous Superfamily
:
Urease metallochaperone UreE, N-terminal domain
(9)
Baker's yeast (Saccharomyces cerevisiae)
(4)
2a
1nltA03
A:256-337
2b
1nltA01
A:110-142,A:209-255
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Pfam Domains
(0, 0)
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