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1NJ8
Asym. Unit
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Asym.Unit (316 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (157 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROLYL-TRNA SYNTHETASE FROM METHANOCALDOCOCCUS JANASCHII
Authors
:
S. Kamtekar, W. D. Kennedy, J. Wang, C. Stathopoulos, D. Soll, T. A. Steitz
Date
:
30 Dec 02 (Deposition) - 04 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Class-Ii Trna Synthetase, Ligase
(Keyword Search:
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)
Reference
:
S. Kamtekar, W. D. Kennedy, J. Wang, C. Stathopoulos, D. Soll, T. A. Steitz
The Structural Basis Of Cysteine Aminoacylation Of Trnapro By Prolyl-Trna Synthetases
Proc. Natl. Acad. Sci. Usa V. 100 1673 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1nj8a3 (A:0-267)
1b: SCOP_d1nj8b3 (B:0-267)
1c: SCOP_d1nj8c3 (C:0-267)
1d: SCOP_d1nj8d3 (D:0-267)
2a: SCOP_d1nj8a2 (A:394-455)
2b: SCOP_d1nj8b2 (B:394-455)
2c: SCOP_d1nj8c2 (C:394-455)
2d: SCOP_d1nj8d2 (D:394-455)
3a: SCOP_d1nj8a1 (A:268-393)
3b: SCOP_d1nj8b1 (B:268-393)
3c: SCOP_d1nj8c1 (C:268-393)
3d: SCOP_d1nj8d1 (D:268-393)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Prolyl-tRNA synthetase (ProRS)
(9)
Methanocaldococcus jannaschii [TaxId: 2190]
(1)
1a
d1nj8a3
A:0-267
1b
d1nj8b3
B:0-267
1c
d1nj8c3
C:0-267
1d
d1nj8d3
D:0-267
Fold
:
IF3-like
(127)
Superfamily
:
C-terminal domain of ProRS
(9)
Family
:
C-terminal domain of ProRS
(9)
Protein domain
:
C-terminal domain of ProRS
(9)
Methanocaldococcus jannaschii [TaxId: 2190]
(1)
2a
d1nj8a2
A:394-455
2b
d1nj8b2
B:394-455
2c
d1nj8c2
C:394-455
2d
d1nj8d2
D:394-455
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Anticodon-binding domain-like
(97)
Superfamily
:
Class II aaRS ABD-related
(40)
Family
:
Anticodon-binding domain of Class II aaRS
(33)
Protein domain
:
Prolyl-tRNA synthetase (ProRS) domain
(9)
Methanocaldococcus jannaschii [TaxId: 2190]
(1)
3a
d1nj8a1
A:268-393
3b
d1nj8b1
B:268-393
3c
d1nj8c1
C:268-393
3d
d1nj8d1
D:268-393
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1nj8A01 (A:0-273)
1b: CATH_1nj8B01 (B:0-273)
1c: CATH_1nj8C01 (C:0-273)
1d: CATH_1nj8D01 (D:0-273)
2a: CATH_1nj8A03 (A:394-454)
2b: CATH_1nj8B03 (B:394-454)
2c: CATH_1nj8C03 (C:394-454)
2d: CATH_1nj8D03 (D:394-454)
3a: CATH_1nj8A02 (A:274-376)
3b: CATH_1nj8B02 (B:274-376)
3c: CATH_1nj8C02 (C:274-376)
3d: CATH_1nj8D02 (D:274-376)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(1)
1a
1nj8A01
A:0-273
1b
1nj8B01
B:0-273
1c
1nj8C01
C:0-273
1d
1nj8D01
D:0-273
Topology
:
Translation Initiation Factor IF3
(34)
Homologous Superfamily
:
[code=3.30.110.30, no name defined]
(9)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(1)
2a
1nj8A03
A:394-454
2b
1nj8B03
B:394-454
2c
1nj8C03
C:394-454
2d
1nj8D03
D:394-454
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.800, no name defined]
(40)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(1)
3a
1nj8A02
A:274-376
3b
1nj8B02
B:274-376
3c
1nj8C02
C:274-376
3d
1nj8D02
D:274-376
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_HGTP_anticodon_1nj8D01 (D:280-374)
1b: PFAM_HGTP_anticodon_1nj8D02 (D:280-374)
1c: PFAM_HGTP_anticodon_1nj8D03 (D:280-374)
1d: PFAM_HGTP_anticodon_1nj8D04 (D:280-374)
2a: PFAM_ProRS_C_2_1nj8D05 (D:394-455)
2b: PFAM_ProRS_C_2_1nj8D06 (D:394-455)
2c: PFAM_ProRS_C_2_1nj8D07 (D:394-455)
2d: PFAM_ProRS_C_2_1nj8D08 (D:394-455)
3a: PFAM_tRNA_synt_2b_1nj8D09 (D:36-209)
3b: PFAM_tRNA_synt_2b_1nj8D10 (D:36-209)
3c: PFAM_tRNA_synt_2b_1nj8D11 (D:36-209)
3d: PFAM_tRNA_synt_2b_1nj8D12 (D:36-209)
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)
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)
Clan
:
IIaaRS-ABD
(13)
Family
:
HGTP_anticodon
(13)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
1a
HGTP_anticodon-1nj8D01
D:280-374
1b
HGTP_anticodon-1nj8D02
D:280-374
1c
HGTP_anticodon-1nj8D03
D:280-374
1d
HGTP_anticodon-1nj8D04
D:280-374
Clan
:
no clan defined [family: ProRS-C_2]
(1)
Family
:
ProRS-C_2
(1)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
2a
ProRS-C_2-1nj8D05
D:394-455
2b
ProRS-C_2-1nj8D06
D:394-455
2c
ProRS-C_2-1nj8D07
D:394-455
2d
ProRS-C_2-1nj8D08
D:394-455
Clan
:
tRNA_synt_II
(64)
Family
:
tRNA-synt_2b
(25)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
3a
tRNA-synt_2b-1nj8D09
D:36-209
3b
tRNA-synt_2b-1nj8D10
D:36-209
3c
tRNA-synt_2b-1nj8D11
D:36-209
3d
tRNA-synt_2b-1nj8D12
D:36-209
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Asym.Unit (316 KB)
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