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1NGM
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A YEAST BRF1-TBP-DNA TERNARY COMPLEX
Authors
:
Z. S. Juo, G. A. Kassavetis, J. Wang, E. P. Geiduschek, P. B. Sigler
Date
:
17 Dec 02 (Deposition) - 25 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Transcription, Tfiiib, Tbp, Brf, Brf1, Taf, Protein-Dna Complex, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. S. Juo, G. A. Kassavetis, J. Wang, E. P. Geiduschek, P. B. Sigler
Crystal Structure Of A Transcription Factor Iiib Core Interface Ternary Complex
Nature V. 422 534 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: TFIID (A:94-143,E:94-143,I:94-143,M:94-14...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TFIID
PS00351
Transcription factor TFIID repeat signature.
TBP_YEAST
94-143
185-234
8
A:94-143
E:94-143
I:94-143
M:94-143
A:185-234
E:185-234
I:185-234
M:185-234
[
close PROSITE info
]
Exons
(2, 8)
Info
All Exons
Exon 1.1 (A:61-240 | E:61-240 | I:61-240 | M...)
Exon 2.1 (B:435-506 | F:435-506 | J:454-506 ...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YER148W
1
YER148W.1
V:465298-466020
723
TBP_YEAST
1-240
240
4
A:61-240
E:61-240
I:61-240
M:61-240
180
180
180
180
2.1
YGR246C
1
YGR246C.1
VII:984277-982487
1791
TF3B_YEAST
1-596
596
4
B:435-506
F:435-506
J:454-506
N:454-506
72
72
53
53
[
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SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1ngma1 (A:61-155)
1b: SCOP_d1ngma2 (A:156-240)
1c: SCOP_d1ngme1 (E:61-155)
1d: SCOP_d1ngme2 (E:156-240)
1e: SCOP_d1ngmi1 (I:61-155)
1f: SCOP_d1ngmi2 (I:156-240)
1g: SCOP_d1ngmm1 (M:61-155)
1h: SCOP_d1ngmm2 (M:156-240)
2a: SCOP_d1ngmb_ (B:)
2b: SCOP_d1ngmf_ (F:)
2c: SCOP_d1ngmj_ (J:)
2d: SCOP_d1ngmn_ (N:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
TATA-box binding protein-like
(70)
Family
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Protein domain
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
1a
d1ngma1
A:61-155
1b
d1ngma2
A:156-240
1c
d1ngme1
E:61-155
1d
d1ngme2
E:156-240
1e
d1ngmi1
I:61-155
1f
d1ngmi2
I:156-240
1g
d1ngmm1
M:61-155
1h
d1ngmm2
M:156-240
Class
:
Peptides
(792)
Fold
:
TBP-binding domain of the transcription factor IIIb Brf1 subunit
(1)
Superfamily
:
TBP-binding domain of the transcription factor IIIb Brf1 subunit
(1)
Family
:
TBP-binding domain of the transcription factor IIIb Brf1 subunit
(1)
Protein domain
:
TBP-binding domain of the transcription factor IIIb Brf1 subunit
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
2a
d1ngmb_
B:
2b
d1ngmf_
F:
2c
d1ngmj_
J:
2d
d1ngmn_
N:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1ngmA01 (A:61-71,A:158-240)
1b: CATH_1ngmA02 (A:72-157)
1c: CATH_1ngmE02 (E:72-157)
1d: CATH_1ngmI02 (I:72-157)
1e: CATH_1ngmM02 (M:72-157)
1f: CATH_1ngmE01 (E:61-71,E:158-240)
1g: CATH_1ngmI01 (I:61-71,I:158-240)
1h: CATH_1ngmM01 (M:61-71,M:158-240)
2a: CATH_1ngmB00 (B:435-506)
2b: CATH_1ngmF00 (F:435-506)
2c: CATH_1ngmJ00 (J:454-506)
2d: CATH_1ngmN00 (N:454-506)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
TATA-Binding Protein
(37)
[unclassified]
(13)
1a
1ngmA01
A:61-71,A:158-240
1b
1ngmA02
A:72-157
1c
1ngmE02
E:72-157
1d
1ngmI02
I:72-157
1e
1ngmM02
M:72-157
1f
1ngmE01
E:61-71,E:158-240
1g
1ngmI01
I:61-71,I:158-240
1h
1ngmM01
M:61-71,M:158-240
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(1)
[unclassified]
(1)
2a
1ngmB00
B:435-506
2b
1ngmF00
F:435-506
2c
1ngmJ00
J:454-506
2d
1ngmN00
N:454-506
[
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]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_TBP_1ngmM01 (M:152-238)
1b: PFAM_TBP_1ngmM02 (M:152-238)
1c: PFAM_TBP_1ngmM03 (M:152-238)
1d: PFAM_TBP_1ngmM04 (M:152-238)
1e: PFAM_TBP_1ngmM05 (M:152-238)
1f: PFAM_TBP_1ngmM06 (M:152-238)
1g: PFAM_TBP_1ngmM07 (M:152-238)
1h: PFAM_TBP_1ngmM08 (M:152-238)
2a: PFAM_BRF1_1ngmN01 (N:466-506)
2b: PFAM_BRF1_1ngmN02 (N:466-506)
2c: PFAM_BRF1_1ngmN03 (N:466-506)
2d: PFAM_BRF1_1ngmN04 (N:466-506)
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Clans
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Clan
:
TBP-like
(48)
Family
:
TBP
(22)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
1a
TBP-1ngmM01
M:152-238
1b
TBP-1ngmM02
M:152-238
1c
TBP-1ngmM03
M:152-238
1d
TBP-1ngmM04
M:152-238
1e
TBP-1ngmM05
M:152-238
1f
TBP-1ngmM06
M:152-238
1g
TBP-1ngmM07
M:152-238
1h
TBP-1ngmM08
M:152-238
Clan
:
no clan defined [family: BRF1]
(1)
Family
:
BRF1
(1)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
2a
BRF1-1ngmN01
N:466-506
2b
BRF1-1ngmN02
N:466-506
2c
BRF1-1ngmN03
N:466-506
2d
BRF1-1ngmN04
N:466-506
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