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1NFV
Biol. Unit 2
Info
Asym.Unit (531 KB)
Biol.Unit 1 (510 KB)
Biol.Unit 2 (757 KB)
Biol.Unit 3 (764 KB)
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(1)
Title
:
X-RAY STRUCTURE OF DESULFOVIBRIO DESULFURICANS BACTERIOFERRITIN: THE DIIRON CENTRE IN DIFFERENT CATALYTIC STATES (AS-ISOLATED STRUCTURE)
Authors
:
S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier, M. Teixeira, P. Lindley, M. A. Carrondo
Date
:
16 Dec 02 (Deposition) - 01 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Biol. Unit 2: C,D,E,F,K,L,O,P (3x)
Biol. Unit 3: A,B,G,H,I,J,M,N (3x)
Keywords
:
Bacterioferritin, 24 Subunits In The Active Molecule, Diiron Centre, Haem Fe-Coproporphyrin Iii Cofactor, Iron Storage-Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier J. Legall, M. Teixeira, P. Lindley, M. A. Carrondo
The Nature Of The Di-Iron Site In The Bacterioferritin From Desulfovibrio Desulfuricans
Nat. Struct. Biol. V. 10 285 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 117)
Info
All Hetero Components
1a: 3-HYDROXYPYRUVIC ACID (3PYa)
3a: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECa)
3b: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECb)
3c: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECc)
3d: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECd)
3e: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECe)
3f: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECf)
3g: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECg)
3h: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECh)
2a: FE (III) ION (FEa)
2aa: FE (III) ION (FEaa)
2ab: FE (III) ION (FEab)
2ac: FE (III) ION (FEac)
2ad: FE (III) ION (FEad)
2ae: FE (III) ION (FEae)
2af: FE (III) ION (FEaf)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
3e: FE (III) ION (FEe)
3f: FE (III) ION (FEf)
3g: FE (III) ION (FEg)
3h: FE (III) ION (FEh)
3i: FE (III) ION (FEi)
3j: FE (III) ION (FEj)
3k: FE (III) ION (FEk)
3l: FE (III) ION (FEl)
3m: FE (III) ION (FEm)
3n: FE (III) ION (FEn)
3o: FE (III) ION (FEo)
3p: FE (III) ION (FEp)
3q: FE (III) ION (FEq)
3r: FE (III) ION (FEr)
3s: FE (III) ION (FEs)
3t: FE (III) ION (FEt)
3u: FE (III) ION (FEu)
3v: FE (III) ION (FEv)
3w: FE (III) ION (FEw)
3x: FE (III) ION (FEx)
3y: FE (III) ION (FEy)
3z: FE (III) ION (FEz)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
4u: GLYCEROL (GOLu)
4v: GLYCEROL (GOLv)
4w: GLYCEROL (GOLw)
4x: GLYCEROL (GOLx)
5a: SULFATE ION (SO4a)
5aa: SULFATE ION (SO4aa)
5ab: SULFATE ION (SO4ab)
5ac: SULFATE ION (SO4ac)
5ad: SULFATE ION (SO4ad)
5ae: SULFATE ION (SO4ae)
5af: SULFATE ION (SO4af)
5ag: SULFATE ION (SO4ag)
5ah: SULFATE ION (SO4ah)
5ai: SULFATE ION (SO4ai)
5aj: SULFATE ION (SO4aj)
5ak: SULFATE ION (SO4ak)
5al: SULFATE ION (SO4al)
5am: SULFATE ION (SO4am)
5an: SULFATE ION (SO4an)
5ao: SULFATE ION (SO4ao)
5ap: SULFATE ION (SO4ap)
5aq: SULFATE ION (SO4aq)
5ar: SULFATE ION (SO4ar)
5as: SULFATE ION (SO4as)
5at: SULFATE ION (SO4at)
5au: SULFATE ION (SO4au)
5av: SULFATE ION (SO4av)
5aw: SULFATE ION (SO4aw)
5ax: SULFATE ION (SO4ax)
5ay: SULFATE ION (SO4ay)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
5x: SULFATE ION (SO4x)
5y: SULFATE ION (SO4y)
5z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PY
3
Ligand/Ion
3-HYDROXYPYRUVIC ACID
2
FE
-1
Ligand/Ion
FE (III) ION
3
FEC
12
Ligand/Ion
1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
4
GOL
30
Ligand/Ion
GLYCEROL
5
SO4
72
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(57, 57)
Info
All Sites
01: BC4 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC5 (SOFTWARE)
21: EC1 (SOFTWARE)
22: FC1 (SOFTWARE)
23: FC9 (SOFTWARE)
24: GC1 (SOFTWARE)
25: GC2 (SOFTWARE)
26: GC3 (SOFTWARE)
27: GC4 (SOFTWARE)
28: GC5 (SOFTWARE)
29: GC6 (SOFTWARE)
30: GC7 (SOFTWARE)
31: GC8 (SOFTWARE)
32: GC9 (SOFTWARE)
33: HC1 (SOFTWARE)
34: IC2 (SOFTWARE)
35: IC3 (SOFTWARE)
36: IC4 (SOFTWARE)
37: IC5 (SOFTWARE)
38: IC6 (SOFTWARE)
39: IC7 (SOFTWARE)
40: IC8 (SOFTWARE)
41: IC9 (SOFTWARE)
42: JC1 (SOFTWARE)
43: JC2 (SOFTWARE)
44: JC4 (SOFTWARE)
45: JC5 (SOFTWARE)
46: JC8 (SOFTWARE)
47: KC1 (SOFTWARE)
48: KC5 (SOFTWARE)
49: KC6 (SOFTWARE)
50: KC7 (SOFTWARE)
51: KC8 (SOFTWARE)
52: KC9 (SOFTWARE)
53: LC1 (SOFTWARE)
54: MC1 (SOFTWARE)
55: MC5 (SOFTWARE)
56: MC6 (SOFTWARE)
57: MC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC4
SOFTWARE
GLU C:23 , GLU C:56 , HIS C:59 , GLU C:132
BINDING SITE FOR RESIDUE FE C 200
02
BC5
SOFTWARE
GLU C:56 , GLU C:99 , GLU C:132 , HIS C:135
BINDING SITE FOR RESIDUE FE C 201
03
BC6
SOFTWARE
LYS C:50 , SER C:163 , THR C:164 , GLY C:165 , HOH C:441 , HOH C:472 , FEC D:1311
BINDING SITE FOR RESIDUE SO4 C 1201
04
BC7
SOFTWARE
SER C:144 , LYS C:147 , ASN C:148 , HOH C:326
BINDING SITE FOR RESIDUE SO4 C 1203
05
BC8
SOFTWARE
PRO C:161 , SER C:162 , SER C:163
BINDING SITE FOR RESIDUE SO4 C 1206
06
BC9
SOFTWARE
GLU D:23 , GLU D:56 , HIS D:59 , GLU D:132 , FE D:201
BINDING SITE FOR RESIDUE FE D 200
07
CC1
SOFTWARE
GLU D:56 , GLU D:99 , GLU D:132 , HIS D:135 , FE D:200
BINDING SITE FOR RESIDUE FE D 201
08
CC2
SOFTWARE
LYS D:50 , SER D:162 , THR D:164 , HOH D:391 , HOH D:9939
BINDING SITE FOR RESIDUE SO4 D 1301
09
CC3
SOFTWARE
HOH B:1210 , SER D:144 , LYS D:147 , ASN D:148 , HOH D:9873
BINDING SITE FOR RESIDUE SO4 D 1303
10
CC4
SOFTWARE
LYS E:114 , LYS O:114
BINDING SITE FOR RESIDUE SO4 E 1304
11
CC5
SOFTWARE
GLU E:23 , GLU E:56 , HIS E:59 , GLU E:132 , FE E:201
BINDING SITE FOR RESIDUE FE E 200
12
CC6
SOFTWARE
GLU E:56 , GLU E:99 , GLU E:132 , HIS E:135 , FE E:200
BINDING SITE FOR RESIDUE FE E 201
13
CC7
SOFTWARE
LYS E:50 , SER E:162 , SER E:163 , THR E:164 , GLY E:165 , HOH E:658 , HOH E:9631
BINDING SITE FOR RESIDUE SO4 E 1401
14
CC8
SOFTWARE
PRO E:161 , SER E:162 , SER E:163
BINDING SITE FOR RESIDUE SO4 E 1406
15
CC9
SOFTWARE
GLU F:23 , GLU F:56 , HIS F:59 , GLU F:132
BINDING SITE FOR RESIDUE FE F 200
16
DC1
SOFTWARE
GLU F:56 , GLU F:99 , GLU F:132 , HIS F:135
BINDING SITE FOR RESIDUE FE F 201
17
DC2
SOFTWARE
LYS F:50 , SER F:162 , SER F:163 , THR F:164 , GLY F:165 , HOH F:570 , HOH F:574 , HOH F:660
BINDING SITE FOR RESIDUE SO4 F 1501
18
DC3
SOFTWARE
ASN F:4 , ARG F:5 , HOH F:680
BINDING SITE FOR RESIDUE SO4 F 1502
19
DC4
SOFTWARE
LYS F:114 , LYS K:114 , LYS P:114
BINDING SITE FOR RESIDUE SO4 K 1504
20
DC5
SOFTWARE
PRO F:161 , SER F:162 , SER F:163
BINDING SITE FOR RESIDUE SO4 F 1506
21
EC1
SOFTWARE
LYS F:147 , LEU G:149 , GLY G:150 , ASP G:151 , THR G:152 , HOH G:1676 , HOH G:1734
BINDING SITE FOR RESIDUE SO4 G 1607
22
FC1
SOFTWARE
ARG I:5 , ASN L:4 , ARG L:5 , SO4 L:2102
BINDING SITE FOR RESIDUE SO4 I 1802
23
FC9
SOFTWARE
GLU K:23 , GLU K:56 , HIS K:59 , GLU K:132
BINDING SITE FOR RESIDUE FE K 200
24
GC1
SOFTWARE
GLU K:56 , GLU K:99 , GLU K:132 , HIS K:135
BINDING SITE FOR RESIDUE FE K 201
25
GC2
SOFTWARE
LYS K:50 , THR K:164 , GLY K:165 , HOH K:9128 , HOH K:9885 , HOH L:2227
BINDING SITE FOR RESIDUE SO4 K 2001
26
GC3
SOFTWARE
SER K:144 , LYS K:147 , ASN K:148
BINDING SITE FOR RESIDUE SO4 K 2003
27
GC4
SOFTWARE
PRO K:161 , SER K:162 , SER K:163
BINDING SITE FOR RESIDUE SO4 K 2006
28
GC5
SOFTWARE
GLU L:23 , GLU L:56 , HIS L:59 , GLU L:132 , FE L:201
BINDING SITE FOR RESIDUE FE L 200
29
GC6
SOFTWARE
GLU L:56 , GLU L:99 , GLU L:132 , HIS L:135 , FE L:200
BINDING SITE FOR RESIDUE FE L 201
30
GC7
SOFTWARE
LYS L:50 , THR L:164 , GLY L:165 , HOH L:2216
BINDING SITE FOR RESIDUE SO4 L 2101
31
GC8
SOFTWARE
ARG I:5 , SO4 I:1802 , ASN L:4 , ARG L:5
BINDING SITE FOR RESIDUE SO4 L 2102
32
GC9
SOFTWARE
HOH K:9153 , SER L:144 , LYS L:147 , ASN L:148
BINDING SITE FOR RESIDUE SO4 L 2103
33
HC1
SOFTWARE
HOH G:1696 , THR K:152 , GLY L:150 , ASP L:151 , THR L:152 , HOH L:2218
BINDING SITE FOR RESIDUE SO4 L 2107
34
IC2
SOFTWARE
GLU O:23 , GLU O:56 , HIS O:59 , GLU O:132 , FE O:201
BINDING SITE FOR RESIDUE FE O 200
35
IC3
SOFTWARE
GLU O:56 , GLU O:99 , GLU O:132 , HIS O:135 , FE O:200
BINDING SITE FOR RESIDUE FE O 201
36
IC4
SOFTWARE
PRO O:161 , SER O:162 , SER O:163
BINDING SITE FOR RESIDUE SO4 O 2406
37
IC5
SOFTWARE
ARG E:123 , ARG O:123 , ARG O:127
BINDING SITE FOR RESIDUE SO4 O 2409
38
IC6
SOFTWARE
GLU P:23 , GLU P:56 , HIS P:59 , GLU P:132 , FE P:201
BINDING SITE FOR RESIDUE FE P 200
39
IC7
SOFTWARE
GLU P:56 , GLU P:99 , GLU P:132 , HIS P:135 , FE P:200
BINDING SITE FOR RESIDUE FE P 201
40
IC8
SOFTWARE
LYS P:50 , SER P:162 , SER P:163 , THR P:164 , GLY P:165 , HOH P:9918
BINDING SITE FOR RESIDUE SO4 P 2501
41
IC9
SOFTWARE
SER P:144
BINDING SITE FOR RESIDUE SO4 P 2503
42
JC1
SOFTWARE
PRO P:161 , SER P:162 , SER P:163
BINDING SITE FOR RESIDUE SO4 P 2506
43
JC2
SOFTWARE
ARG D:58 , HIS D:59 , ASN D:62 , ARG D:127 , GLU D:131
BINDING SITE FOR RESIDUE 3PY D 1310
44
JC4
SOFTWARE
ARG C:20 , ILE C:27 , HIS C:28 , MET C:31 , TYR C:35 , LYS C:50 , MET C:57 , ARG C:58 , GLU C:61 , SER C:168 , LYS C:169 , SO4 C:1201 , ARG D:20 , HIS D:28 , MET D:31 , TYR D:35 , LYS D:50 , ILE D:54 , MET D:57 , ARG D:58 , GLU D:61 , ALA D:167 , SER D:168 , LYS D:169 , HOH D:368 , HOH D:371
BINDING SITE FOR RESIDUE FEC D 1311
45
JC5
SOFTWARE
ARG E:20 , HIS E:28 , MET E:31 , TYR E:35 , LYS E:50 , ILE E:54 , MET E:57 , ARG E:58 , GLU E:61 , ALA E:167 , SER E:168 , LYS E:169 , ARG F:20 , HIS F:28 , MET F:31 , TYR F:35 , LYS F:50 , MET F:57 , ARG F:58 , GLU F:61 , ALA F:167 , SER F:168 , LYS F:169 , HOH F:551 , HOH F:554
BINDING SITE FOR RESIDUE FEC F 1507
46
JC8
SOFTWARE
ARG K:20 , HIS K:28 , MET K:31 , TYR K:35 , LYS K:50 , MET K:57 , ARG K:58 , GLU K:61 , SER K:168 , LYS K:169 , ARG L:20 , HIS L:28 , MET L:31 , TYR L:35 , LYS L:50 , MET L:57 , ARG L:58 , GLU L:61 , SER L:168 , LYS L:169 , HOH L:2120 , HOH L:2123 , HOH L:2166 , HOH L:2227
BINDING SITE FOR RESIDUE FEC L 2108
47
KC1
SOFTWARE
ARG O:20 , HIS O:28 , MET O:31 , TYR O:35 , LYS O:50 , MET O:57 , ARG O:58 , GLU O:61 , ALA O:167 , SER O:168 , LYS O:169 , ARG P:20 , HIS P:28 , MET P:31 , TYR P:35 , LYS P:50 , MET P:57 , ARG P:58 , GLU P:61 , SER P:168 , LYS P:169 , HOH P:9506 , HOH P:9508
BINDING SITE FOR RESIDUE FEC P 2507
48
KC5
SOFTWARE
ARG C:58 , HIS C:59 , ASN C:62 , GLU C:131
BINDING SITE FOR RESIDUE GOL C 1210
49
KC6
SOFTWARE
GLN C:77 , LYS C:78 , GLN D:77 , LYS D:78
BINDING SITE FOR RESIDUE GOL D 1211
50
KC7
SOFTWARE
ARG E:58 , HIS E:59 , ASN E:62 , ARG E:127 , GLU E:131
BINDING SITE FOR RESIDUE GOL E 1410
51
KC8
SOFTWARE
GLN E:77 , LYS E:78 , GLN F:77 , LYS F:78
BINDING SITE FOR RESIDUE GOL E 1411
52
KC9
SOFTWARE
ARG F:58 , HIS F:59 , ASN F:62 , ARG F:127 , GLU F:131
BINDING SITE FOR RESIDUE GOL F 1510
53
LC1
SOFTWARE
PRO F:89 , LYS F:147 , HOH F:9926 , ASP G:151 , LYS I:147 , ASN I:148 , LEU I:149 , GLY I:150 , HOH I:978
BINDING SITE FOR RESIDUE GOL F 1512
54
MC1
SOFTWARE
GLN K:77 , LYS K:78 , HOH K:9116 , GLN L:77 , LYS L:78
BINDING SITE FOR RESIDUE GOL K 2011
55
MC5
SOFTWARE
ARG O:58 , HIS O:59 , ASN O:62 , ARG O:127 , GLU O:131 , HOH O:2414
BINDING SITE FOR RESIDUE GOL O 2410
56
MC6
SOFTWARE
LYS O:78 , GLN P:77 , LYS P:78
BINDING SITE FOR RESIDUE GOL O 2411
57
MC7
SOFTWARE
ARG P:58 , HIS P:59 , ASN P:62 , LEU P:124 , ARG P:127 , GLU P:131
BINDING SITE FOR RESIDUE GOL P 2510
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 24)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (C:6-150,D:6-150,E:6-150,F:6-150,K:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
BFR_DESDA
6-150
24
-
-
C:6-150
D:6-150
E:6-150
F:6-150
-
-
-
-
K:6-150
L:6-150
-
-
O:6-150
P:6-150
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1nfva_ (A:)
1b: SCOP_d1nfvb_ (B:)
1c: SCOP_d1nfvc_ (C:)
1d: SCOP_d1nfvd_ (D:)
1e: SCOP_d1nfve_ (E:)
1f: SCOP_d1nfvf_ (F:)
1g: SCOP_d1nfvg_ (G:)
1h: SCOP_d1nfvh_ (H:)
1i: SCOP_d1nfvi_ (I:)
1j: SCOP_d1nfvj_ (J:)
1k: SCOP_d1nfvk_ (K:)
1l: SCOP_d1nfvl_ (L:)
1m: SCOP_d1nfvm_ (M:)
1n: SCOP_d1nfvn_ (N:)
1o: SCOP_d1nfvo_ (O:)
1p: SCOP_d1nfvp_ (P:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Bacterioferritin (cytochrome b1)
(19)
Desulfovibrio desulfuricans [TaxId: 876]
(3)
1a
d1nfva_
A:
1b
d1nfvb_
B:
1c
d1nfvc_
C:
1d
d1nfvd_
D:
1e
d1nfve_
E:
1f
d1nfvf_
F:
1g
d1nfvg_
G:
1h
d1nfvh_
H:
1i
d1nfvi_
I:
1j
d1nfvj_
J:
1k
d1nfvk_
K:
1l
d1nfvl_
L:
1m
d1nfvm_
M:
1n
d1nfvn_
N:
1o
d1nfvo_
O:
1p
d1nfvp_
P:
[
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]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1nfvA00 (A:4-172)
1b: CATH_1nfvG00 (G:4-172)
1c: CATH_1nfvJ00 (J:3-172)
1d: CATH_1nfvK00 (K:3-172)
1e: CATH_1nfvL00 (L:3-172)
1f: CATH_1nfvM00 (M:3-172)
1g: CATH_1nfvN00 (N:3-172)
1h: CATH_1nfvP00 (P:3-172)
1i: CATH_1nfvO00 (O:4-172)
1j: CATH_1nfvB00 (B:3-172)
1k: CATH_1nfvC00 (C:3-172)
1l: CATH_1nfvD00 (D:3-172)
1m: CATH_1nfvE00 (E:3-172)
1n: CATH_1nfvF00 (F:3-172)
1o: CATH_1nfvH00 (H:3-172)
1p: CATH_1nfvI00 (I:3-172)
View:
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Desulfovibrio desulfuricans. Organism_taxid: 876. Strain: atcc 27774
(3)
1a
1nfvA00
A:4-172
1b
1nfvG00
G:4-172
1c
1nfvJ00
J:3-172
1d
1nfvK00
K:3-172
1e
1nfvL00
L:3-172
1f
1nfvM00
M:3-172
1g
1nfvN00
N:3-172
1h
1nfvP00
P:3-172
1i
1nfvO00
O:4-172
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1nfvB00
B:3-172
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1nfvC00
C:3-172
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1nfvD00
D:3-172
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1nfvE00
E:3-172
1n
1nfvF00
F:3-172
1o
1nfvH00
H:3-172
1p
1nfvI00
I:3-172
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Ferritin_1nfvP01 (P:13-149)
1b: PFAM_Ferritin_1nfvP02 (P:13-149)
1c: PFAM_Ferritin_1nfvP03 (P:13-149)
1d: PFAM_Ferritin_1nfvP04 (P:13-149)
1e: PFAM_Ferritin_1nfvP05 (P:13-149)
1f: PFAM_Ferritin_1nfvP06 (P:13-149)
1g: PFAM_Ferritin_1nfvP07 (P:13-149)
1h: PFAM_Ferritin_1nfvP08 (P:13-149)
1i: PFAM_Ferritin_1nfvP09 (P:13-149)
1j: PFAM_Ferritin_1nfvP10 (P:13-149)
1k: PFAM_Ferritin_1nfvP11 (P:13-149)
1l: PFAM_Ferritin_1nfvP12 (P:13-149)
1m: PFAM_Ferritin_1nfvP13 (P:13-149)
1n: PFAM_Ferritin_1nfvP14 (P:13-149)
1o: PFAM_Ferritin_1nfvP15 (P:13-149)
1p: PFAM_Ferritin_1nfvP16 (P:13-149)
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Clan
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Ferritin
(185)
Family
:
Ferritin
(83)
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949)
(3)
1a
Ferritin-1nfvP01
P:13-149
1b
Ferritin-1nfvP02
P:13-149
1c
Ferritin-1nfvP03
P:13-149
1d
Ferritin-1nfvP04
P:13-149
1e
Ferritin-1nfvP05
P:13-149
1f
Ferritin-1nfvP06
P:13-149
1g
Ferritin-1nfvP07
P:13-149
1h
Ferritin-1nfvP08
P:13-149
1i
Ferritin-1nfvP09
P:13-149
1j
Ferritin-1nfvP10
P:13-149
1k
Ferritin-1nfvP11
P:13-149
1l
Ferritin-1nfvP12
P:13-149
1m
Ferritin-1nfvP13
P:13-149
1n
Ferritin-1nfvP14
P:13-149
1o
Ferritin-1nfvP15
P:13-149
1p
Ferritin-1nfvP16
P:13-149
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