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(-) Description

Title :  X-RAY STRUCTURE OF DESULFOVIBRIO DESULFURICANS BACTERIOFERRITIN: THE DIIRON CENTRE IN DIFFERENT CATALYTIC STATES (AS-ISOLATED STRUCTURE)
 
Authors :  S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier, M. Teixeira, P. Lindley, M. A. Carrondo
Date :  16 Dec 02  (Deposition) - 01 Apr 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P  (1x)
Biol. Unit 2:  C,D,E,F,K,L,O,P  (3x)
Biol. Unit 3:  A,B,G,H,I,J,M,N  (3x)
Keywords :  Bacterioferritin, 24 Subunits In The Active Molecule, Diiron Centre, Haem Fe-Coproporphyrin Iii Cofactor, Iron Storage-Electron Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier J. Legall, M. Teixeira, P. Lindley, M. A. Carrondo
The Nature Of The Di-Iron Site In The Bacterioferritin From Desulfovibrio Desulfuricans
Nat. Struct. Biol. V. 10 285 2003
PubMed-ID: 12627224  |  Reference-DOI: 10.1038/NSB909
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    Organism Scientific: DESULFOVIBRIO DESULFURICANS
    Organism Taxid: 876
    Strain: ATCC 27774

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCDEFGHIJKLMNOP
Biological Unit 2 (3x):   CDEF    KL  OP
Biological Unit 3 (3x): AB    GHIJ  MN  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 116)

Asymmetric Unit (5, 116)
No.NameCountTypeFull Name
13PY1Ligand/Ion3-HYDROXYPYRUVIC ACID
2FE32Ligand/IonFE (III) ION
3FEC8Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
4GOL24Ligand/IonGLYCEROL
5SO451Ligand/IonSULFATE ION
Biological Unit 1 (4, 84)
No.NameCountTypeFull Name
13PY1Ligand/Ion3-HYDROXYPYRUVIC ACID
2FE-1Ligand/IonFE (III) ION
3FEC8Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
4GOL24Ligand/IonGLYCEROL
5SO451Ligand/IonSULFATE ION
Biological Unit 2 (4, 117)
No.NameCountTypeFull Name
13PY3Ligand/Ion3-HYDROXYPYRUVIC ACID
2FE-1Ligand/IonFE (III) ION
3FEC12Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
4GOL30Ligand/IonGLYCEROL
5SO472Ligand/IonSULFATE ION
Biological Unit 3 (3, 135)
No.NameCountTypeFull Name
13PY-1Ligand/Ion3-HYDROXYPYRUVIC ACID
2FE-1Ligand/IonFE (III) ION
3FEC12Ligand/Ion1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
4GOL42Ligand/IonGLYCEROL
5SO481Ligand/IonSULFATE ION

(-) Sites  (115, 115)

Asymmetric Unit (115, 115)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREGLU A:23 , GLU A:56 , HIS A:59 , GLU A:132BINDING SITE FOR RESIDUE FE A 200
002AC2SOFTWAREGLU A:56 , GLU A:99 , GLU A:132 , HIS A:135BINDING SITE FOR RESIDUE FE A 201
003AC3SOFTWARELYS A:50 , THR A:164 , GLY A:165 , HOH A:1152 , FEC B:1107BINDING SITE FOR RESIDUE SO4 A 1001
004AC4SOFTWARETHR A:76 , GLN A:77 , SO4 A:1008 , LYS B:78 , LYS B:81 , VAL B:82 , GOL B:1011BINDING SITE FOR RESIDUE SO4 B 1005
005AC5SOFTWAREPRO A:161 , SER A:162 , SER A:163 , HOH A:1204BINDING SITE FOR RESIDUE SO4 A 1006
006AC6SOFTWARETHR A:75 , THR A:76 , GLN A:77 , HOH A:1215 , SO4 B:1005BINDING SITE FOR RESIDUE SO4 A 1008
007AC7SOFTWAREGLU B:23 , GLU B:56 , HIS B:59 , GLU B:132BINDING SITE FOR RESIDUE FE B 200
008AC8SOFTWAREGLU B:56 , GLU B:99 , GLU B:132 , HIS B:135BINDING SITE FOR RESIDUE FE B 201
009AC9SOFTWARELYS B:50 , SER B:162 , SER B:163 , THR B:164 , HOH B:1130BINDING SITE FOR RESIDUE SO4 B 1101
010BC1SOFTWARELYS B:114 , LYS G:114 , LYS N:114BINDING SITE FOR RESIDUE SO4 B 1104
011BC2SOFTWARELYS A:78 , GLY A:80 , LYS A:81 , VAL A:82 , THR B:76 , GLN B:77BINDING SITE FOR RESIDUE SO4 A 1105
012BC3SOFTWAREPRO B:161 , SER B:162 , SER B:163BINDING SITE FOR RESIDUE SO4 B 1106
013BC4SOFTWAREGLU C:23 , GLU C:56 , HIS C:59 , GLU C:132BINDING SITE FOR RESIDUE FE C 200
014BC5SOFTWAREGLU C:56 , GLU C:99 , GLU C:132 , HIS C:135BINDING SITE FOR RESIDUE FE C 201
015BC6SOFTWARELYS C:50 , SER C:163 , THR C:164 , GLY C:165 , HOH C:441 , HOH C:472 , FEC D:1311BINDING SITE FOR RESIDUE SO4 C 1201
016BC7SOFTWARESER C:144 , LYS C:147 , ASN C:148 , HOH C:326BINDING SITE FOR RESIDUE SO4 C 1203
017BC8SOFTWAREPRO C:161 , SER C:162 , SER C:163BINDING SITE FOR RESIDUE SO4 C 1206
018BC9SOFTWAREGLU D:23 , GLU D:56 , HIS D:59 , GLU D:132 , FE D:201BINDING SITE FOR RESIDUE FE D 200
019CC1SOFTWAREGLU D:56 , GLU D:99 , GLU D:132 , HIS D:135 , FE D:200BINDING SITE FOR RESIDUE FE D 201
020CC2SOFTWARELYS D:50 , SER D:162 , THR D:164 , HOH D:391 , HOH D:9939BINDING SITE FOR RESIDUE SO4 D 1301
021CC3SOFTWAREHOH B:1210 , SER D:144 , LYS D:147 , ASN D:148 , HOH D:9873BINDING SITE FOR RESIDUE SO4 D 1303
022CC4SOFTWARELYS E:114 , LYS O:114BINDING SITE FOR RESIDUE SO4 E 1304
023CC5SOFTWAREGLU E:23 , GLU E:56 , HIS E:59 , GLU E:132 , FE E:201BINDING SITE FOR RESIDUE FE E 200
024CC6SOFTWAREGLU E:56 , GLU E:99 , GLU E:132 , HIS E:135 , FE E:200BINDING SITE FOR RESIDUE FE E 201
025CC7SOFTWARELYS E:50 , SER E:162 , SER E:163 , THR E:164 , GLY E:165 , HOH E:658 , HOH E:9631BINDING SITE FOR RESIDUE SO4 E 1401
026CC8SOFTWAREPRO E:161 , SER E:162 , SER E:163BINDING SITE FOR RESIDUE SO4 E 1406
027CC9SOFTWAREGLU F:23 , GLU F:56 , HIS F:59 , GLU F:132BINDING SITE FOR RESIDUE FE F 200
028DC1SOFTWAREGLU F:56 , GLU F:99 , GLU F:132 , HIS F:135BINDING SITE FOR RESIDUE FE F 201
029DC2SOFTWARELYS F:50 , SER F:162 , SER F:163 , THR F:164 , GLY F:165 , HOH F:570 , HOH F:574 , HOH F:660BINDING SITE FOR RESIDUE SO4 F 1501
030DC3SOFTWAREASN F:4 , ARG F:5 , HOH F:680BINDING SITE FOR RESIDUE SO4 F 1502
031DC4SOFTWARELYS F:114 , LYS K:114 , LYS P:114BINDING SITE FOR RESIDUE SO4 K 1504
032DC5SOFTWAREPRO F:161 , SER F:162 , SER F:163BINDING SITE FOR RESIDUE SO4 F 1506
033DC6SOFTWAREGLU G:23 , GLU G:56 , HIS G:59 , GLU G:132BINDING SITE FOR RESIDUE FE G 200
034DC7SOFTWAREGLU G:56 , GLU G:99 , GLU G:132 , HIS G:135BINDING SITE FOR RESIDUE FE G 201
035DC8SOFTWARESER G:144 , ASN G:148BINDING SITE FOR RESIDUE SO4 G 1603
036DC9SOFTWAREPRO G:161 , SER G:162 , SER G:163BINDING SITE FOR RESIDUE SO4 G 1606
037EC1SOFTWARELYS F:147 , LEU G:149 , GLY G:150 , ASP G:151 , THR G:152 , HOH G:1676 , HOH G:1734BINDING SITE FOR RESIDUE SO4 G 1607
038EC2SOFTWAREGLU H:23 , GLU H:56 , HIS H:59 , GLU H:132BINDING SITE FOR RESIDUE FE H 200
039EC3SOFTWAREGLU H:56 , GLU H:99 , GLU H:132 , HIS H:135BINDING SITE FOR RESIDUE FE H 201
040EC4SOFTWARELYS H:50 , THR H:164 , HOH H:761BINDING SITE FOR RESIDUE SO4 H 1701
041EC5SOFTWARESER H:144 , ASN H:148BINDING SITE FOR RESIDUE SO4 H 1703
042EC6SOFTWAREPRO H:161 , SER H:162 , SER H:163BINDING SITE FOR RESIDUE SO4 H 1706
043EC7SOFTWAREGLU I:23 , GLU I:56 , HIS I:59 , GLU I:132BINDING SITE FOR RESIDUE FE I 200
044EC8SOFTWAREGLU I:56 , GLU I:99 , GLU I:132 , HIS I:135BINDING SITE FOR RESIDUE FE I 201
045EC9SOFTWARELYS I:50 , SER I:163 , THR I:164 , HOH I:8910BINDING SITE FOR RESIDUE SO4 I 1801
046FC1SOFTWAREARG I:5 , ASN L:4 , ARG L:5 , SO4 L:2102BINDING SITE FOR RESIDUE SO4 I 1802
047FC2SOFTWARESER I:144 , LYS I:147 , ASN I:148BINDING SITE FOR RESIDUE SO4 I 1803
048FC3SOFTWAREPRO I:161 , SER I:162 , SER I:163 , HOH I:9021BINDING SITE FOR RESIDUE SO4 I 1806
049FC4SOFTWAREGLU J:23 , GLU J:56 , HIS J:59 , GLU J:132 , FE J:201BINDING SITE FOR RESIDUE FE J 200
050FC5SOFTWAREGLU J:56 , GLU J:99 , GLU J:132 , HIS J:135 , FE J:200BINDING SITE FOR RESIDUE FE J 201
051FC6SOFTWAREFEC I:1807 , LYS J:50 , SER J:163 , THR J:164 , GLY J:165 , HOH J:962BINDING SITE FOR RESIDUE SO4 J 1901
052FC7SOFTWARELYS J:114BINDING SITE FOR RESIDUE SO4 J 1904
053FC8SOFTWAREPRO J:161 , SER J:162 , SER J:163BINDING SITE FOR RESIDUE SO4 J 1906
054FC9SOFTWAREGLU K:23 , GLU K:56 , HIS K:59 , GLU K:132BINDING SITE FOR RESIDUE FE K 200
055GC1SOFTWAREGLU K:56 , GLU K:99 , GLU K:132 , HIS K:135BINDING SITE FOR RESIDUE FE K 201
056GC2SOFTWARELYS K:50 , THR K:164 , GLY K:165 , HOH K:9128 , HOH K:9885 , HOH L:2227BINDING SITE FOR RESIDUE SO4 K 2001
057GC3SOFTWARESER K:144 , LYS K:147 , ASN K:148BINDING SITE FOR RESIDUE SO4 K 2003
058GC4SOFTWAREPRO K:161 , SER K:162 , SER K:163BINDING SITE FOR RESIDUE SO4 K 2006
059GC5SOFTWAREGLU L:23 , GLU L:56 , HIS L:59 , GLU L:132 , FE L:201BINDING SITE FOR RESIDUE FE L 200
060GC6SOFTWAREGLU L:56 , GLU L:99 , GLU L:132 , HIS L:135 , FE L:200BINDING SITE FOR RESIDUE FE L 201
061GC7SOFTWARELYS L:50 , THR L:164 , GLY L:165 , HOH L:2216BINDING SITE FOR RESIDUE SO4 L 2101
062GC8SOFTWAREARG I:5 , SO4 I:1802 , ASN L:4 , ARG L:5BINDING SITE FOR RESIDUE SO4 L 2102
063GC9SOFTWAREHOH K:9153 , SER L:144 , LYS L:147 , ASN L:148BINDING SITE FOR RESIDUE SO4 L 2103
064HC1SOFTWAREHOH G:1696 , THR K:152 , GLY L:150 , ASP L:151 , THR L:152 , HOH L:2218BINDING SITE FOR RESIDUE SO4 L 2107
065HC2SOFTWAREGLU M:23 , GLU M:56 , HIS M:59 , GLU M:132BINDING SITE FOR RESIDUE FE M 200
066HC3SOFTWAREGLU M:56 , GLU M:99 , GLU M:132 , HIS M:135BINDING SITE FOR RESIDUE FE M 201
067HC4SOFTWARELYS M:50 , SER M:163 , THR M:164 , FEC M:2207 , HOH M:9356 , HOH M:9451BINDING SITE FOR RESIDUE SO4 M 2201
068HC5SOFTWAREPRO M:161 , SER M:162 , SER M:163 , HOH M:9477BINDING SITE FOR RESIDUE SO4 M 2206
069HC6SOFTWAREGLU N:23 , GLU N:56 , HIS N:59 , GLU N:132 , FE N:201BINDING SITE FOR RESIDUE FE N 200
070HC7SOFTWAREGLU N:56 , GLU N:99 , GLU N:132 , HIS N:135 , FE N:200BINDING SITE FOR RESIDUE FE N 201
071HC8SOFTWARELYS N:50 , SER N:162 , SER N:163 , THR N:164 , HOH N:2342BINDING SITE FOR RESIDUE SO4 N 2301
072HC9SOFTWARESER N:144 , LYS N:147 , ASN N:148BINDING SITE FOR RESIDUE SO4 N 2303
073IC1SOFTWAREPRO N:161 , SER N:162 , SER N:163BINDING SITE FOR RESIDUE SO4 N 2306
074IC2SOFTWAREGLU O:23 , GLU O:56 , HIS O:59 , GLU O:132 , FE O:201BINDING SITE FOR RESIDUE FE O 200
075IC3SOFTWAREGLU O:56 , GLU O:99 , GLU O:132 , HIS O:135 , FE O:200BINDING SITE FOR RESIDUE FE O 201
076IC4SOFTWAREPRO O:161 , SER O:162 , SER O:163BINDING SITE FOR RESIDUE SO4 O 2406
077IC5SOFTWAREARG E:123 , ARG O:123 , ARG O:127BINDING SITE FOR RESIDUE SO4 O 2409
078IC6SOFTWAREGLU P:23 , GLU P:56 , HIS P:59 , GLU P:132 , FE P:201BINDING SITE FOR RESIDUE FE P 200
079IC7SOFTWAREGLU P:56 , GLU P:99 , GLU P:132 , HIS P:135 , FE P:200BINDING SITE FOR RESIDUE FE P 201
080IC8SOFTWARELYS P:50 , SER P:162 , SER P:163 , THR P:164 , GLY P:165 , HOH P:9918BINDING SITE FOR RESIDUE SO4 P 2501
081IC9SOFTWARESER P:144BINDING SITE FOR RESIDUE SO4 P 2503
082JC1SOFTWAREPRO P:161 , SER P:162 , SER P:163BINDING SITE FOR RESIDUE SO4 P 2506
083JC2SOFTWAREARG D:58 , HIS D:59 , ASN D:62 , ARG D:127 , GLU D:131BINDING SITE FOR RESIDUE 3PY D 1310
084JC3SOFTWAREARG A:20 , HIS A:28 , MET A:31 , TYR A:35 , LYS A:50 , MET A:57 , ARG A:58 , GLU A:61 , ALA A:167 , SER A:168 , LYS A:169 , SO4 A:1001 , ARG B:20 , ILE B:27 , HIS B:28 , MET B:31 , TYR B:35 , LYS B:50 , MET B:57 , ARG B:58 , GLU B:61 , SER B:168 , LYS B:169 , HOH B:1120 , HOH B:1122BINDING SITE FOR RESIDUE FEC B 1107
085JC4SOFTWAREARG C:20 , ILE C:27 , HIS C:28 , MET C:31 , TYR C:35 , LYS C:50 , MET C:57 , ARG C:58 , GLU C:61 , SER C:168 , LYS C:169 , SO4 C:1201 , ARG D:20 , HIS D:28 , MET D:31 , TYR D:35 , LYS D:50 , ILE D:54 , MET D:57 , ARG D:58 , GLU D:61 , ALA D:167 , SER D:168 , LYS D:169 , HOH D:368 , HOH D:371BINDING SITE FOR RESIDUE FEC D 1311
086JC5SOFTWAREARG E:20 , HIS E:28 , MET E:31 , TYR E:35 , LYS E:50 , ILE E:54 , MET E:57 , ARG E:58 , GLU E:61 , ALA E:167 , SER E:168 , LYS E:169 , ARG F:20 , HIS F:28 , MET F:31 , TYR F:35 , LYS F:50 , MET F:57 , ARG F:58 , GLU F:61 , ALA F:167 , SER F:168 , LYS F:169 , HOH F:551 , HOH F:554BINDING SITE FOR RESIDUE FEC F 1507
087JC6SOFTWAREARG G:20 , HIS G:28 , MET G:31 , TYR G:35 , LYS G:50 , MET G:57 , ARG G:58 , GLU G:61 , ALA G:167 , SER G:168 , LYS G:169 , HOH G:1631 , HOH G:1714 , ARG H:20 , HIS H:28 , MET H:31 , TYR H:35 , LYS H:50 , MET H:57 , ARG H:58 , GLU H:61 , SER H:168 , LYS H:169 , HOH H:737BINDING SITE FOR RESIDUE FEC G 1608
088JC7SOFTWAREARG I:20 , HIS I:28 , MET I:31 , TYR I:35 , LYS I:50 , MET I:57 , ARG I:58 , GLU I:61 , SER I:168 , LYS I:169 , HOH I:941 , ARG J:20 , MET J:31 , TYR J:35 , LYS J:50 , MET J:57 , ARG J:58 , GLU J:61 , SER J:168 , LYS J:169 , HOH J:938 , SO4 J:1901BINDING SITE FOR RESIDUE FEC I 1807
089JC8SOFTWAREARG K:20 , HIS K:28 , MET K:31 , TYR K:35 , LYS K:50 , MET K:57 , ARG K:58 , GLU K:61 , SER K:168 , LYS K:169 , ARG L:20 , HIS L:28 , MET L:31 , TYR L:35 , LYS L:50 , MET L:57 , ARG L:58 , GLU L:61 , SER L:168 , LYS L:169 , HOH L:2120 , HOH L:2123 , HOH L:2166 , HOH L:2227BINDING SITE FOR RESIDUE FEC L 2108
090JC9SOFTWAREARG M:20 , HIS M:28 , MET M:31 , TYR M:35 , LYS M:50 , MET M:57 , ARG M:58 , GLU M:61 , SER M:168 , LYS M:169 , SO4 M:2201 , HOH M:9282 , HOH M:9285 , ARG N:20 , HIS N:28 , MET N:31 , TYR N:35 , LYS N:50 , MET N:57 , ARG N:58 , GLU N:61 , SER N:168 , LYS N:169BINDING SITE FOR RESIDUE FEC M 2207
091KC1SOFTWAREARG O:20 , HIS O:28 , MET O:31 , TYR O:35 , LYS O:50 , MET O:57 , ARG O:58 , GLU O:61 , ALA O:167 , SER O:168 , LYS O:169 , ARG P:20 , HIS P:28 , MET P:31 , TYR P:35 , LYS P:50 , MET P:57 , ARG P:58 , GLU P:61 , SER P:168 , LYS P:169 , HOH P:9506 , HOH P:9508BINDING SITE FOR RESIDUE FEC P 2507
092KC2SOFTWAREARG A:58 , HIS A:59 , ASN A:62 , LEU A:124 , GLU A:131 , HOH A:1195BINDING SITE FOR RESIDUE GOL A 1010
093KC3SOFTWARELYS A:78 , GLN B:77 , LYS B:78 , SO4 B:1005 , HOH B:1236BINDING SITE FOR RESIDUE GOL B 1011
094KC4SOFTWAREARG B:58 , HIS B:59 , ASN B:62 , LEU B:124 , ARG B:127 , GLU B:131BINDING SITE FOR RESIDUE GOL B 1110
095KC5SOFTWAREARG C:58 , HIS C:59 , ASN C:62 , GLU C:131BINDING SITE FOR RESIDUE GOL C 1210
096KC6SOFTWAREGLN C:77 , LYS C:78 , GLN D:77 , LYS D:78BINDING SITE FOR RESIDUE GOL D 1211
097KC7SOFTWAREARG E:58 , HIS E:59 , ASN E:62 , ARG E:127 , GLU E:131BINDING SITE FOR RESIDUE GOL E 1410
098KC8SOFTWAREGLN E:77 , LYS E:78 , GLN F:77 , LYS F:78BINDING SITE FOR RESIDUE GOL E 1411
099KC9SOFTWAREARG F:58 , HIS F:59 , ASN F:62 , ARG F:127 , GLU F:131BINDING SITE FOR RESIDUE GOL F 1510
100LC1SOFTWAREPRO F:89 , LYS F:147 , HOH F:9926 , ASP G:151 , LYS I:147 , ASN I:148 , LEU I:149 , GLY I:150 , HOH I:978BINDING SITE FOR RESIDUE GOL F 1512
101LC2SOFTWAREARG G:58 , HIS G:59 , ASN G:62 , ARG G:127 , GLU G:131BINDING SITE FOR RESIDUE GOL G 1610
102LC3SOFTWAREGLN G:77 , LYS G:78 , GLN H:77 , LYS H:78BINDING SITE FOR RESIDUE GOL G 1611
103LC4SOFTWAREARG H:58 , HIS H:59 , ASN H:62 , ARG H:127 , GLU H:131BINDING SITE FOR RESIDUE GOL H 1710
104LC5SOFTWAREARG H:123 , ARG H:127 , ARG I:123 , ARG I:127 , HOH I:882 , HOH I:9947BINDING SITE FOR RESIDUE GOL I 1713
105LC6SOFTWAREARG I:58 , HIS I:59 , ASN I:62 , LEU I:124 , ARG I:127 , GLU I:131BINDING SITE FOR RESIDUE GOL I 1810
106LC7SOFTWAREGLN I:77 , LYS I:78 , GLN J:77 , LYS J:78BINDING SITE FOR RESIDUE GOL J 1811
107LC8SOFTWAREARG H:5 , LYS H:9 , HOH H:772 , HOH H:784 , ILE I:103 , GLU I:104BINDING SITE FOR RESIDUE GOL H 1814
108LC9SOFTWAREARG J:58 , HIS J:59 , ASN J:62 , LEU J:124 , ARG J:127 , GLU J:131 , HOH J:8922BINDING SITE FOR RESIDUE GOL J 1910
109MC1SOFTWAREGLN K:77 , LYS K:78 , HOH K:9116 , GLN L:77 , LYS L:78BINDING SITE FOR RESIDUE GOL K 2011
110MC2SOFTWAREARG M:58 , ASN M:62 , LEU M:124 , ARG M:127 , GLU M:131 , HOH M:823BINDING SITE FOR RESIDUE GOL M 2210
111MC3SOFTWAREGLN M:77 , LYS M:78 , GLN N:77 , LYS N:78BINDING SITE FOR RESIDUE GOL M 2211
112MC4SOFTWAREARG N:58 , HIS N:59 , ASN N:62 , LEU N:124 , ARG N:127 , GLU N:131BINDING SITE FOR RESIDUE GOL N 2310
113MC5SOFTWAREARG O:58 , HIS O:59 , ASN O:62 , ARG O:127 , GLU O:131 , HOH O:2414BINDING SITE FOR RESIDUE GOL O 2410
114MC6SOFTWARELYS O:78 , GLN P:77 , LYS P:78BINDING SITE FOR RESIDUE GOL O 2411
115MC7SOFTWAREARG P:58 , HIS P:59 , ASN P:62 , LEU P:124 , ARG P:127 , GLU P:131BINDING SITE FOR RESIDUE GOL P 2510

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NFV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NFV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NFV)

(-) PROSITE Motifs  (1, 16)

Asymmetric Unit (1, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  16A:6-150
B:6-150
C:6-150
D:6-150
E:6-150
F:6-150
G:6-150
H:6-150
I:6-150
J:6-150
K:6-150
L:6-150
M:6-150
N:6-150
O:6-150
P:6-150
Biological Unit 1 (1, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  16A:6-150
B:6-150
C:6-150
D:6-150
E:6-150
F:6-150
G:6-150
H:6-150
I:6-150
J:6-150
K:6-150
L:6-150
M:6-150
N:6-150
O:6-150
P:6-150
Biological Unit 2 (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  24-
-
C:6-150
D:6-150
E:6-150
F:6-150
-
-
-
-
K:6-150
L:6-150
-
-
O:6-150
P:6-150
Biological Unit 3 (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.BFR_DESDA6-150
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  24A:6-150
B:6-150
-
-
-
-
G:6-150
H:6-150
I:6-150
J:6-150
-
-
M:6-150
N:6-150
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 1NFV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:169
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         
            BFR_DESDA     4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfva_ A: Bacterioferritin (cytochrome b1)                                                                                                                               SCOP domains
               CATH domains 1nfvA00 A:4-172  [code=1.20.1260.10, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FERRITIN_LIKE  PDB: A:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv A   4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         


Chain B from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvb_ B: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvB00 B:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: B:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv B   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain C from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvc_ C: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvC00 C:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: C:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv C   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain D from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvd_ D: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvD00 D:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: D:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv D   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain E from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfve_ E: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvE00 E:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: E:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv E   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain F from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvf_ F: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvF00 F:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: F:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv F   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain G from PDB  Type:PROTEIN  Length:169
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:169
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         
            BFR_DESDA     4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvg_ G: Bacterioferritin (cytochrome b1)                                                                                                                               SCOP domains
               CATH domains 1nfvG00 G:4-172  [code=1.20.1260.10, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FERRITIN_LIKE  PDB: G:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv G   4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         


Chain H from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvh_ H: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvH00 H:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: H:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv H   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain I from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvi_ I: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvI00 I:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: I:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv I   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain J from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvj_ J: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvJ00 J:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: J:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv J   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain K from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvk_ K: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvK00 K:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: K:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv K   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain L from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvl_ L: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvL00 L:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: L:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv L   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain M from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvm_ M: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvM00 M:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: M:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv M   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain N from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvn_ N: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvN00 N:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: N:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv N   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain O from PDB  Type:PROTEIN  Length:169
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:169
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         
            BFR_DESDA     4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvo_ O: Bacterioferritin (cytochrome b1)                                                                                                                               SCOP domains
               CATH domains 1nfvO00 O:4-172  [code=1.20.1260.10, no name defined]                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --FERRITIN_LIKE  PDB: O:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv O   4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163         


Chain P from PDB  Type:PROTEIN  Length:170
 aligned with BFR_DESDA | Q93PP9 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
            BFR_DESDA     3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
               SCOP domains d1nfvp_ P: Bacterioferritin (cytochrome b1)                                                                                                                                SCOP domains
               CATH domains 1nfvP00 P:3-172  [code=1.20.1260.10, no name defined]                                                                                                                      CATH domains
           Pfam domains (1) ----------Ferritin-1nfvP01 P:13-149                                                                                                                ----------------------- Pfam domains (1)
           Pfam domains (2) ----------Ferritin-1nfvP02 P:13-149                                                                                                                ----------------------- Pfam domains (2)
           Pfam domains (3) ----------Ferritin-1nfvP03 P:13-149                                                                                                                ----------------------- Pfam domains (3)
           Pfam domains (4) ----------Ferritin-1nfvP04 P:13-149                                                                                                                ----------------------- Pfam domains (4)
           Pfam domains (5) ----------Ferritin-1nfvP05 P:13-149                                                                                                                ----------------------- Pfam domains (5)
           Pfam domains (6) ----------Ferritin-1nfvP06 P:13-149                                                                                                                ----------------------- Pfam domains (6)
           Pfam domains (7) ----------Ferritin-1nfvP07 P:13-149                                                                                                                ----------------------- Pfam domains (7)
           Pfam domains (8) ----------Ferritin-1nfvP08 P:13-149                                                                                                                ----------------------- Pfam domains (8)
           Pfam domains (9) ----------Ferritin-1nfvP09 P:13-149                                                                                                                ----------------------- Pfam domains (9)
          Pfam domains (10) ----------Ferritin-1nfvP10 P:13-149                                                                                                                ----------------------- Pfam domains (10)
          Pfam domains (11) ----------Ferritin-1nfvP11 P:13-149                                                                                                                ----------------------- Pfam domains (11)
          Pfam domains (12) ----------Ferritin-1nfvP12 P:13-149                                                                                                                ----------------------- Pfam domains (12)
          Pfam domains (13) ----------Ferritin-1nfvP13 P:13-149                                                                                                                ----------------------- Pfam domains (13)
          Pfam domains (14) ----------Ferritin-1nfvP14 P:13-149                                                                                                                ----------------------- Pfam domains (14)
          Pfam domains (15) ----------Ferritin-1nfvP15 P:13-149                                                                                                                ----------------------- Pfam domains (15)
          Pfam domains (16) ----------Ferritin-1nfvP16 P:13-149                                                                                                                ----------------------- Pfam domains (16)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---FERRITIN_LIKE  PDB: P:6-150 UniProt: 6-150                                                                                                       ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1nfv P   3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDTYLAKIAGTPSSTGTASKGFV 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Up-down Bundle (3216)
(-)
Topology: Ferritin; (180)
(-)
Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)
(-)
Desulfovibrio desulfuricans. Organism_taxid: 876. Strain: atcc 27774 (3)
1a1nfvA00A:4-172
1b1nfvG00G:4-172
1c1nfvJ00J:3-172
1d1nfvK00K:3-172
1e1nfvL00L:3-172
1f1nfvM00M:3-172
1g1nfvN00N:3-172
1h1nfvP00P:3-172
1i1nfvO00O:4-172
1j1nfvB00B:3-172
1k1nfvC00C:3-172
1l1nfvD00D:3-172
1m1nfvE00E:3-172
1n1nfvF00F:3-172
1o1nfvH00H:3-172
1p1nfvI00I:3-172

(-) Pfam Domains  (1, 16)

Asymmetric Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P   (BFR_DESDA | Q93PP9)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0004322    ferroxidase activity    Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0006880    intracellular sequestering of iron ion    The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system.
    GO:0006826    iron ion transport    The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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  BFR_DESDA | Q93PP9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BFR_DESDA | Q93PP9: 1nf4 1nf6

(-) Related Entries Specified in the PDB File

1nf4 SAME PROTEIN, REDUCED STRUCTURE
1nf6 SAME PROTEIN, REDUCED AND ALLOWED TO REOXIDIZE PRIOR TO CRYSTALLIZATION; ONLY ONE IRON PRESENT IN THE DIIRON BINDING SITE