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1NFV
Biol. Unit 1
Info
Asym.Unit (531 KB)
Biol.Unit 1 (510 KB)
Biol.Unit 2 (757 KB)
Biol.Unit 3 (764 KB)
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(1)
Title
:
X-RAY STRUCTURE OF DESULFOVIBRIO DESULFURICANS BACTERIOFERRITIN: THE DIIRON CENTRE IN DIFFERENT CATALYTIC STATES (AS-ISOLATED STRUCTURE)
Authors
:
S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier, M. Teixeira, P. Lindley, M. A. Carrondo
Date
:
16 Dec 02 (Deposition) - 01 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Biol. Unit 2: C,D,E,F,K,L,O,P (3x)
Biol. Unit 3: A,B,G,H,I,J,M,N (3x)
Keywords
:
Bacterioferritin, 24 Subunits In The Active Molecule, Diiron Centre, Haem Fe-Coproporphyrin Iii Cofactor, Iron Storage-Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier J. Legall, M. Teixeira, P. Lindley, M. A. Carrondo
The Nature Of The Di-Iron Site In The Bacterioferritin From Desulfovibrio Desulfuricans
Nat. Struct. Biol. V. 10 285 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 84)
Info
All Hetero Components
1a: 3-HYDROXYPYRUVIC ACID (3PYa)
3a: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECa)
3b: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECb)
3c: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECc)
3d: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECd)
3e: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECe)
3f: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECf)
3g: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECg)
3h: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECh)
2a: FE (III) ION (FEa)
2aa: FE (III) ION (FEaa)
2ab: FE (III) ION (FEab)
2ac: FE (III) ION (FEac)
2ad: FE (III) ION (FEad)
2ae: FE (III) ION (FEae)
2af: FE (III) ION (FEaf)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
3e: FE (III) ION (FEe)
3f: FE (III) ION (FEf)
3g: FE (III) ION (FEg)
3h: FE (III) ION (FEh)
3i: FE (III) ION (FEi)
3j: FE (III) ION (FEj)
3k: FE (III) ION (FEk)
3l: FE (III) ION (FEl)
3m: FE (III) ION (FEm)
3n: FE (III) ION (FEn)
3o: FE (III) ION (FEo)
3p: FE (III) ION (FEp)
3q: FE (III) ION (FEq)
3r: FE (III) ION (FEr)
3s: FE (III) ION (FEs)
3t: FE (III) ION (FEt)
3u: FE (III) ION (FEu)
3v: FE (III) ION (FEv)
3w: FE (III) ION (FEw)
3x: FE (III) ION (FEx)
3y: FE (III) ION (FEy)
3z: FE (III) ION (FEz)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
4u: GLYCEROL (GOLu)
4v: GLYCEROL (GOLv)
4w: GLYCEROL (GOLw)
4x: GLYCEROL (GOLx)
5a: SULFATE ION (SO4a)
5aa: SULFATE ION (SO4aa)
5ab: SULFATE ION (SO4ab)
5ac: SULFATE ION (SO4ac)
5ad: SULFATE ION (SO4ad)
5ae: SULFATE ION (SO4ae)
5af: SULFATE ION (SO4af)
5ag: SULFATE ION (SO4ag)
5ah: SULFATE ION (SO4ah)
5ai: SULFATE ION (SO4ai)
5aj: SULFATE ION (SO4aj)
5ak: SULFATE ION (SO4ak)
5al: SULFATE ION (SO4al)
5am: SULFATE ION (SO4am)
5an: SULFATE ION (SO4an)
5ao: SULFATE ION (SO4ao)
5ap: SULFATE ION (SO4ap)
5aq: SULFATE ION (SO4aq)
5ar: SULFATE ION (SO4ar)
5as: SULFATE ION (SO4as)
5at: SULFATE ION (SO4at)
5au: SULFATE ION (SO4au)
5av: SULFATE ION (SO4av)
5aw: SULFATE ION (SO4aw)
5ax: SULFATE ION (SO4ax)
5ay: SULFATE ION (SO4ay)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
5x: SULFATE ION (SO4x)
5y: SULFATE ION (SO4y)
5z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PY
1
Ligand/Ion
3-HYDROXYPYRUVIC ACID
2
FE
-1
Ligand/Ion
FE (III) ION
3
FEC
8
Ligand/Ion
1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
4
GOL
24
Ligand/Ion
GLYCEROL
5
SO4
51
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(115, 115)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
101: LC2 (SOFTWARE)
102: LC3 (SOFTWARE)
103: LC4 (SOFTWARE)
104: LC5 (SOFTWARE)
105: LC6 (SOFTWARE)
106: LC7 (SOFTWARE)
107: LC8 (SOFTWARE)
108: LC9 (SOFTWARE)
109: MC1 (SOFTWARE)
110: MC2 (SOFTWARE)
111: MC3 (SOFTWARE)
112: MC4 (SOFTWARE)
113: MC5 (SOFTWARE)
114: MC6 (SOFTWARE)
115: MC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
GLU A:23 , GLU A:56 , HIS A:59 , GLU A:132
BINDING SITE FOR RESIDUE FE A 200
002
AC2
SOFTWARE
GLU A:56 , GLU A:99 , GLU A:132 , HIS A:135
BINDING SITE FOR RESIDUE FE A 201
003
AC3
SOFTWARE
LYS A:50 , THR A:164 , GLY A:165 , HOH A:1152 , FEC B:1107
BINDING SITE FOR RESIDUE SO4 A 1001
004
AC4
SOFTWARE
THR A:76 , GLN A:77 , SO4 A:1008 , LYS B:78 , LYS B:81 , VAL B:82 , GOL B:1011
BINDING SITE FOR RESIDUE SO4 B 1005
005
AC5
SOFTWARE
PRO A:161 , SER A:162 , SER A:163 , HOH A:1204
BINDING SITE FOR RESIDUE SO4 A 1006
006
AC6
SOFTWARE
THR A:75 , THR A:76 , GLN A:77 , HOH A:1215 , SO4 B:1005
BINDING SITE FOR RESIDUE SO4 A 1008
007
AC7
SOFTWARE
GLU B:23 , GLU B:56 , HIS B:59 , GLU B:132
BINDING SITE FOR RESIDUE FE B 200
008
AC8
SOFTWARE
GLU B:56 , GLU B:99 , GLU B:132 , HIS B:135
BINDING SITE FOR RESIDUE FE B 201
009
AC9
SOFTWARE
LYS B:50 , SER B:162 , SER B:163 , THR B:164 , HOH B:1130
BINDING SITE FOR RESIDUE SO4 B 1101
010
BC1
SOFTWARE
LYS B:114 , LYS G:114 , LYS N:114
BINDING SITE FOR RESIDUE SO4 B 1104
011
BC2
SOFTWARE
LYS A:78 , GLY A:80 , LYS A:81 , VAL A:82 , THR B:76 , GLN B:77
BINDING SITE FOR RESIDUE SO4 A 1105
012
BC3
SOFTWARE
PRO B:161 , SER B:162 , SER B:163
BINDING SITE FOR RESIDUE SO4 B 1106
013
BC4
SOFTWARE
GLU C:23 , GLU C:56 , HIS C:59 , GLU C:132
BINDING SITE FOR RESIDUE FE C 200
014
BC5
SOFTWARE
GLU C:56 , GLU C:99 , GLU C:132 , HIS C:135
BINDING SITE FOR RESIDUE FE C 201
015
BC6
SOFTWARE
LYS C:50 , SER C:163 , THR C:164 , GLY C:165 , HOH C:441 , HOH C:472 , FEC D:1311
BINDING SITE FOR RESIDUE SO4 C 1201
016
BC7
SOFTWARE
SER C:144 , LYS C:147 , ASN C:148 , HOH C:326
BINDING SITE FOR RESIDUE SO4 C 1203
017
BC8
SOFTWARE
PRO C:161 , SER C:162 , SER C:163
BINDING SITE FOR RESIDUE SO4 C 1206
018
BC9
SOFTWARE
GLU D:23 , GLU D:56 , HIS D:59 , GLU D:132 , FE D:201
BINDING SITE FOR RESIDUE FE D 200
019
CC1
SOFTWARE
GLU D:56 , GLU D:99 , GLU D:132 , HIS D:135 , FE D:200
BINDING SITE FOR RESIDUE FE D 201
020
CC2
SOFTWARE
LYS D:50 , SER D:162 , THR D:164 , HOH D:391 , HOH D:9939
BINDING SITE FOR RESIDUE SO4 D 1301
021
CC3
SOFTWARE
HOH B:1210 , SER D:144 , LYS D:147 , ASN D:148 , HOH D:9873
BINDING SITE FOR RESIDUE SO4 D 1303
022
CC4
SOFTWARE
LYS E:114 , LYS O:114
BINDING SITE FOR RESIDUE SO4 E 1304
023
CC5
SOFTWARE
GLU E:23 , GLU E:56 , HIS E:59 , GLU E:132 , FE E:201
BINDING SITE FOR RESIDUE FE E 200
024
CC6
SOFTWARE
GLU E:56 , GLU E:99 , GLU E:132 , HIS E:135 , FE E:200
BINDING SITE FOR RESIDUE FE E 201
025
CC7
SOFTWARE
LYS E:50 , SER E:162 , SER E:163 , THR E:164 , GLY E:165 , HOH E:658 , HOH E:9631
BINDING SITE FOR RESIDUE SO4 E 1401
026
CC8
SOFTWARE
PRO E:161 , SER E:162 , SER E:163
BINDING SITE FOR RESIDUE SO4 E 1406
027
CC9
SOFTWARE
GLU F:23 , GLU F:56 , HIS F:59 , GLU F:132
BINDING SITE FOR RESIDUE FE F 200
028
DC1
SOFTWARE
GLU F:56 , GLU F:99 , GLU F:132 , HIS F:135
BINDING SITE FOR RESIDUE FE F 201
029
DC2
SOFTWARE
LYS F:50 , SER F:162 , SER F:163 , THR F:164 , GLY F:165 , HOH F:570 , HOH F:574 , HOH F:660
BINDING SITE FOR RESIDUE SO4 F 1501
030
DC3
SOFTWARE
ASN F:4 , ARG F:5 , HOH F:680
BINDING SITE FOR RESIDUE SO4 F 1502
031
DC4
SOFTWARE
LYS F:114 , LYS K:114 , LYS P:114
BINDING SITE FOR RESIDUE SO4 K 1504
032
DC5
SOFTWARE
PRO F:161 , SER F:162 , SER F:163
BINDING SITE FOR RESIDUE SO4 F 1506
033
DC6
SOFTWARE
GLU G:23 , GLU G:56 , HIS G:59 , GLU G:132
BINDING SITE FOR RESIDUE FE G 200
034
DC7
SOFTWARE
GLU G:56 , GLU G:99 , GLU G:132 , HIS G:135
BINDING SITE FOR RESIDUE FE G 201
035
DC8
SOFTWARE
SER G:144 , ASN G:148
BINDING SITE FOR RESIDUE SO4 G 1603
036
DC9
SOFTWARE
PRO G:161 , SER G:162 , SER G:163
BINDING SITE FOR RESIDUE SO4 G 1606
037
EC1
SOFTWARE
LYS F:147 , LEU G:149 , GLY G:150 , ASP G:151 , THR G:152 , HOH G:1676 , HOH G:1734
BINDING SITE FOR RESIDUE SO4 G 1607
038
EC2
SOFTWARE
GLU H:23 , GLU H:56 , HIS H:59 , GLU H:132
BINDING SITE FOR RESIDUE FE H 200
039
EC3
SOFTWARE
GLU H:56 , GLU H:99 , GLU H:132 , HIS H:135
BINDING SITE FOR RESIDUE FE H 201
040
EC4
SOFTWARE
LYS H:50 , THR H:164 , HOH H:761
BINDING SITE FOR RESIDUE SO4 H 1701
041
EC5
SOFTWARE
SER H:144 , ASN H:148
BINDING SITE FOR RESIDUE SO4 H 1703
042
EC6
SOFTWARE
PRO H:161 , SER H:162 , SER H:163
BINDING SITE FOR RESIDUE SO4 H 1706
043
EC7
SOFTWARE
GLU I:23 , GLU I:56 , HIS I:59 , GLU I:132
BINDING SITE FOR RESIDUE FE I 200
044
EC8
SOFTWARE
GLU I:56 , GLU I:99 , GLU I:132 , HIS I:135
BINDING SITE FOR RESIDUE FE I 201
045
EC9
SOFTWARE
LYS I:50 , SER I:163 , THR I:164 , HOH I:8910
BINDING SITE FOR RESIDUE SO4 I 1801
046
FC1
SOFTWARE
ARG I:5 , ASN L:4 , ARG L:5 , SO4 L:2102
BINDING SITE FOR RESIDUE SO4 I 1802
047
FC2
SOFTWARE
SER I:144 , LYS I:147 , ASN I:148
BINDING SITE FOR RESIDUE SO4 I 1803
048
FC3
SOFTWARE
PRO I:161 , SER I:162 , SER I:163 , HOH I:9021
BINDING SITE FOR RESIDUE SO4 I 1806
049
FC4
SOFTWARE
GLU J:23 , GLU J:56 , HIS J:59 , GLU J:132 , FE J:201
BINDING SITE FOR RESIDUE FE J 200
050
FC5
SOFTWARE
GLU J:56 , GLU J:99 , GLU J:132 , HIS J:135 , FE J:200
BINDING SITE FOR RESIDUE FE J 201
051
FC6
SOFTWARE
FEC I:1807 , LYS J:50 , SER J:163 , THR J:164 , GLY J:165 , HOH J:962
BINDING SITE FOR RESIDUE SO4 J 1901
052
FC7
SOFTWARE
LYS J:114
BINDING SITE FOR RESIDUE SO4 J 1904
053
FC8
SOFTWARE
PRO J:161 , SER J:162 , SER J:163
BINDING SITE FOR RESIDUE SO4 J 1906
054
FC9
SOFTWARE
GLU K:23 , GLU K:56 , HIS K:59 , GLU K:132
BINDING SITE FOR RESIDUE FE K 200
055
GC1
SOFTWARE
GLU K:56 , GLU K:99 , GLU K:132 , HIS K:135
BINDING SITE FOR RESIDUE FE K 201
056
GC2
SOFTWARE
LYS K:50 , THR K:164 , GLY K:165 , HOH K:9128 , HOH K:9885 , HOH L:2227
BINDING SITE FOR RESIDUE SO4 K 2001
057
GC3
SOFTWARE
SER K:144 , LYS K:147 , ASN K:148
BINDING SITE FOR RESIDUE SO4 K 2003
058
GC4
SOFTWARE
PRO K:161 , SER K:162 , SER K:163
BINDING SITE FOR RESIDUE SO4 K 2006
059
GC5
SOFTWARE
GLU L:23 , GLU L:56 , HIS L:59 , GLU L:132 , FE L:201
BINDING SITE FOR RESIDUE FE L 200
060
GC6
SOFTWARE
GLU L:56 , GLU L:99 , GLU L:132 , HIS L:135 , FE L:200
BINDING SITE FOR RESIDUE FE L 201
061
GC7
SOFTWARE
LYS L:50 , THR L:164 , GLY L:165 , HOH L:2216
BINDING SITE FOR RESIDUE SO4 L 2101
062
GC8
SOFTWARE
ARG I:5 , SO4 I:1802 , ASN L:4 , ARG L:5
BINDING SITE FOR RESIDUE SO4 L 2102
063
GC9
SOFTWARE
HOH K:9153 , SER L:144 , LYS L:147 , ASN L:148
BINDING SITE FOR RESIDUE SO4 L 2103
064
HC1
SOFTWARE
HOH G:1696 , THR K:152 , GLY L:150 , ASP L:151 , THR L:152 , HOH L:2218
BINDING SITE FOR RESIDUE SO4 L 2107
065
HC2
SOFTWARE
GLU M:23 , GLU M:56 , HIS M:59 , GLU M:132
BINDING SITE FOR RESIDUE FE M 200
066
HC3
SOFTWARE
GLU M:56 , GLU M:99 , GLU M:132 , HIS M:135
BINDING SITE FOR RESIDUE FE M 201
067
HC4
SOFTWARE
LYS M:50 , SER M:163 , THR M:164 , FEC M:2207 , HOH M:9356 , HOH M:9451
BINDING SITE FOR RESIDUE SO4 M 2201
068
HC5
SOFTWARE
PRO M:161 , SER M:162 , SER M:163 , HOH M:9477
BINDING SITE FOR RESIDUE SO4 M 2206
069
HC6
SOFTWARE
GLU N:23 , GLU N:56 , HIS N:59 , GLU N:132 , FE N:201
BINDING SITE FOR RESIDUE FE N 200
070
HC7
SOFTWARE
GLU N:56 , GLU N:99 , GLU N:132 , HIS N:135 , FE N:200
BINDING SITE FOR RESIDUE FE N 201
071
HC8
SOFTWARE
LYS N:50 , SER N:162 , SER N:163 , THR N:164 , HOH N:2342
BINDING SITE FOR RESIDUE SO4 N 2301
072
HC9
SOFTWARE
SER N:144 , LYS N:147 , ASN N:148
BINDING SITE FOR RESIDUE SO4 N 2303
073
IC1
SOFTWARE
PRO N:161 , SER N:162 , SER N:163
BINDING SITE FOR RESIDUE SO4 N 2306
074
IC2
SOFTWARE
GLU O:23 , GLU O:56 , HIS O:59 , GLU O:132 , FE O:201
BINDING SITE FOR RESIDUE FE O 200
075
IC3
SOFTWARE
GLU O:56 , GLU O:99 , GLU O:132 , HIS O:135 , FE O:200
BINDING SITE FOR RESIDUE FE O 201
076
IC4
SOFTWARE
PRO O:161 , SER O:162 , SER O:163
BINDING SITE FOR RESIDUE SO4 O 2406
077
IC5
SOFTWARE
ARG E:123 , ARG O:123 , ARG O:127
BINDING SITE FOR RESIDUE SO4 O 2409
078
IC6
SOFTWARE
GLU P:23 , GLU P:56 , HIS P:59 , GLU P:132 , FE P:201
BINDING SITE FOR RESIDUE FE P 200
079
IC7
SOFTWARE
GLU P:56 , GLU P:99 , GLU P:132 , HIS P:135 , FE P:200
BINDING SITE FOR RESIDUE FE P 201
080
IC8
SOFTWARE
LYS P:50 , SER P:162 , SER P:163 , THR P:164 , GLY P:165 , HOH P:9918
BINDING SITE FOR RESIDUE SO4 P 2501
081
IC9
SOFTWARE
SER P:144
BINDING SITE FOR RESIDUE SO4 P 2503
082
JC1
SOFTWARE
PRO P:161 , SER P:162 , SER P:163
BINDING SITE FOR RESIDUE SO4 P 2506
083
JC2
SOFTWARE
ARG D:58 , HIS D:59 , ASN D:62 , ARG D:127 , GLU D:131
BINDING SITE FOR RESIDUE 3PY D 1310
084
JC3
SOFTWARE
ARG A:20 , HIS A:28 , MET A:31 , TYR A:35 , LYS A:50 , MET A:57 , ARG A:58 , GLU A:61 , ALA A:167 , SER A:168 , LYS A:169 , SO4 A:1001 , ARG B:20 , ILE B:27 , HIS B:28 , MET B:31 , TYR B:35 , LYS B:50 , MET B:57 , ARG B:58 , GLU B:61 , SER B:168 , LYS B:169 , HOH B:1120 , HOH B:1122
BINDING SITE FOR RESIDUE FEC B 1107
085
JC4
SOFTWARE
ARG C:20 , ILE C:27 , HIS C:28 , MET C:31 , TYR C:35 , LYS C:50 , MET C:57 , ARG C:58 , GLU C:61 , SER C:168 , LYS C:169 , SO4 C:1201 , ARG D:20 , HIS D:28 , MET D:31 , TYR D:35 , LYS D:50 , ILE D:54 , MET D:57 , ARG D:58 , GLU D:61 , ALA D:167 , SER D:168 , LYS D:169 , HOH D:368 , HOH D:371
BINDING SITE FOR RESIDUE FEC D 1311
086
JC5
SOFTWARE
ARG E:20 , HIS E:28 , MET E:31 , TYR E:35 , LYS E:50 , ILE E:54 , MET E:57 , ARG E:58 , GLU E:61 , ALA E:167 , SER E:168 , LYS E:169 , ARG F:20 , HIS F:28 , MET F:31 , TYR F:35 , LYS F:50 , MET F:57 , ARG F:58 , GLU F:61 , ALA F:167 , SER F:168 , LYS F:169 , HOH F:551 , HOH F:554
BINDING SITE FOR RESIDUE FEC F 1507
087
JC6
SOFTWARE
ARG G:20 , HIS G:28 , MET G:31 , TYR G:35 , LYS G:50 , MET G:57 , ARG G:58 , GLU G:61 , ALA G:167 , SER G:168 , LYS G:169 , HOH G:1631 , HOH G:1714 , ARG H:20 , HIS H:28 , MET H:31 , TYR H:35 , LYS H:50 , MET H:57 , ARG H:58 , GLU H:61 , SER H:168 , LYS H:169 , HOH H:737
BINDING SITE FOR RESIDUE FEC G 1608
088
JC7
SOFTWARE
ARG I:20 , HIS I:28 , MET I:31 , TYR I:35 , LYS I:50 , MET I:57 , ARG I:58 , GLU I:61 , SER I:168 , LYS I:169 , HOH I:941 , ARG J:20 , MET J:31 , TYR J:35 , LYS J:50 , MET J:57 , ARG J:58 , GLU J:61 , SER J:168 , LYS J:169 , HOH J:938 , SO4 J:1901
BINDING SITE FOR RESIDUE FEC I 1807
089
JC8
SOFTWARE
ARG K:20 , HIS K:28 , MET K:31 , TYR K:35 , LYS K:50 , MET K:57 , ARG K:58 , GLU K:61 , SER K:168 , LYS K:169 , ARG L:20 , HIS L:28 , MET L:31 , TYR L:35 , LYS L:50 , MET L:57 , ARG L:58 , GLU L:61 , SER L:168 , LYS L:169 , HOH L:2120 , HOH L:2123 , HOH L:2166 , HOH L:2227
BINDING SITE FOR RESIDUE FEC L 2108
090
JC9
SOFTWARE
ARG M:20 , HIS M:28 , MET M:31 , TYR M:35 , LYS M:50 , MET M:57 , ARG M:58 , GLU M:61 , SER M:168 , LYS M:169 , SO4 M:2201 , HOH M:9282 , HOH M:9285 , ARG N:20 , HIS N:28 , MET N:31 , TYR N:35 , LYS N:50 , MET N:57 , ARG N:58 , GLU N:61 , SER N:168 , LYS N:169
BINDING SITE FOR RESIDUE FEC M 2207
091
KC1
SOFTWARE
ARG O:20 , HIS O:28 , MET O:31 , TYR O:35 , LYS O:50 , MET O:57 , ARG O:58 , GLU O:61 , ALA O:167 , SER O:168 , LYS O:169 , ARG P:20 , HIS P:28 , MET P:31 , TYR P:35 , LYS P:50 , MET P:57 , ARG P:58 , GLU P:61 , SER P:168 , LYS P:169 , HOH P:9506 , HOH P:9508
BINDING SITE FOR RESIDUE FEC P 2507
092
KC2
SOFTWARE
ARG A:58 , HIS A:59 , ASN A:62 , LEU A:124 , GLU A:131 , HOH A:1195
BINDING SITE FOR RESIDUE GOL A 1010
093
KC3
SOFTWARE
LYS A:78 , GLN B:77 , LYS B:78 , SO4 B:1005 , HOH B:1236
BINDING SITE FOR RESIDUE GOL B 1011
094
KC4
SOFTWARE
ARG B:58 , HIS B:59 , ASN B:62 , LEU B:124 , ARG B:127 , GLU B:131
BINDING SITE FOR RESIDUE GOL B 1110
095
KC5
SOFTWARE
ARG C:58 , HIS C:59 , ASN C:62 , GLU C:131
BINDING SITE FOR RESIDUE GOL C 1210
096
KC6
SOFTWARE
GLN C:77 , LYS C:78 , GLN D:77 , LYS D:78
BINDING SITE FOR RESIDUE GOL D 1211
097
KC7
SOFTWARE
ARG E:58 , HIS E:59 , ASN E:62 , ARG E:127 , GLU E:131
BINDING SITE FOR RESIDUE GOL E 1410
098
KC8
SOFTWARE
GLN E:77 , LYS E:78 , GLN F:77 , LYS F:78
BINDING SITE FOR RESIDUE GOL E 1411
099
KC9
SOFTWARE
ARG F:58 , HIS F:59 , ASN F:62 , ARG F:127 , GLU F:131
BINDING SITE FOR RESIDUE GOL F 1510
100
LC1
SOFTWARE
PRO F:89 , LYS F:147 , HOH F:9926 , ASP G:151 , LYS I:147 , ASN I:148 , LEU I:149 , GLY I:150 , HOH I:978
BINDING SITE FOR RESIDUE GOL F 1512
101
LC2
SOFTWARE
ARG G:58 , HIS G:59 , ASN G:62 , ARG G:127 , GLU G:131
BINDING SITE FOR RESIDUE GOL G 1610
102
LC3
SOFTWARE
GLN G:77 , LYS G:78 , GLN H:77 , LYS H:78
BINDING SITE FOR RESIDUE GOL G 1611
103
LC4
SOFTWARE
ARG H:58 , HIS H:59 , ASN H:62 , ARG H:127 , GLU H:131
BINDING SITE FOR RESIDUE GOL H 1710
104
LC5
SOFTWARE
ARG H:123 , ARG H:127 , ARG I:123 , ARG I:127 , HOH I:882 , HOH I:9947
BINDING SITE FOR RESIDUE GOL I 1713
105
LC6
SOFTWARE
ARG I:58 , HIS I:59 , ASN I:62 , LEU I:124 , ARG I:127 , GLU I:131
BINDING SITE FOR RESIDUE GOL I 1810
106
LC7
SOFTWARE
GLN I:77 , LYS I:78 , GLN J:77 , LYS J:78
BINDING SITE FOR RESIDUE GOL J 1811
107
LC8
SOFTWARE
ARG H:5 , LYS H:9 , HOH H:772 , HOH H:784 , ILE I:103 , GLU I:104
BINDING SITE FOR RESIDUE GOL H 1814
108
LC9
SOFTWARE
ARG J:58 , HIS J:59 , ASN J:62 , LEU J:124 , ARG J:127 , GLU J:131 , HOH J:8922
BINDING SITE FOR RESIDUE GOL J 1910
109
MC1
SOFTWARE
GLN K:77 , LYS K:78 , HOH K:9116 , GLN L:77 , LYS L:78
BINDING SITE FOR RESIDUE GOL K 2011
110
MC2
SOFTWARE
ARG M:58 , ASN M:62 , LEU M:124 , ARG M:127 , GLU M:131 , HOH M:823
BINDING SITE FOR RESIDUE GOL M 2210
111
MC3
SOFTWARE
GLN M:77 , LYS M:78 , GLN N:77 , LYS N:78
BINDING SITE FOR RESIDUE GOL M 2211
112
MC4
SOFTWARE
ARG N:58 , HIS N:59 , ASN N:62 , LEU N:124 , ARG N:127 , GLU N:131
BINDING SITE FOR RESIDUE GOL N 2310
113
MC5
SOFTWARE
ARG O:58 , HIS O:59 , ASN O:62 , ARG O:127 , GLU O:131 , HOH O:2414
BINDING SITE FOR RESIDUE GOL O 2410
114
MC6
SOFTWARE
LYS O:78 , GLN P:77 , LYS P:78
BINDING SITE FOR RESIDUE GOL O 2411
115
MC7
SOFTWARE
ARG P:58 , HIS P:59 , ASN P:62 , LEU P:124 , ARG P:127 , GLU P:131
BINDING SITE FOR RESIDUE GOL P 2510
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:6-150,B:6-150,C:6-150,D:6-150,E:...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
BFR_DESDA
6-150
16
A:6-150
B:6-150
C:6-150
D:6-150
E:6-150
F:6-150
G:6-150
H:6-150
I:6-150
J:6-150
K:6-150
L:6-150
M:6-150
N:6-150
O:6-150
P:6-150
[
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]
Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1nfva_ (A:)
1b: SCOP_d1nfvb_ (B:)
1c: SCOP_d1nfvc_ (C:)
1d: SCOP_d1nfvd_ (D:)
1e: SCOP_d1nfve_ (E:)
1f: SCOP_d1nfvf_ (F:)
1g: SCOP_d1nfvg_ (G:)
1h: SCOP_d1nfvh_ (H:)
1i: SCOP_d1nfvi_ (I:)
1j: SCOP_d1nfvj_ (J:)
1k: SCOP_d1nfvk_ (K:)
1l: SCOP_d1nfvl_ (L:)
1m: SCOP_d1nfvm_ (M:)
1n: SCOP_d1nfvn_ (N:)
1o: SCOP_d1nfvo_ (O:)
1p: SCOP_d1nfvp_ (P:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Bacterioferritin (cytochrome b1)
(19)
Desulfovibrio desulfuricans [TaxId: 876]
(3)
1a
d1nfva_
A:
1b
d1nfvb_
B:
1c
d1nfvc_
C:
1d
d1nfvd_
D:
1e
d1nfve_
E:
1f
d1nfvf_
F:
1g
d1nfvg_
G:
1h
d1nfvh_
H:
1i
d1nfvi_
I:
1j
d1nfvj_
J:
1k
d1nfvk_
K:
1l
d1nfvl_
L:
1m
d1nfvm_
M:
1n
d1nfvn_
N:
1o
d1nfvo_
O:
1p
d1nfvp_
P:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1nfvA00 (A:4-172)
1b: CATH_1nfvG00 (G:4-172)
1c: CATH_1nfvJ00 (J:3-172)
1d: CATH_1nfvK00 (K:3-172)
1e: CATH_1nfvL00 (L:3-172)
1f: CATH_1nfvM00 (M:3-172)
1g: CATH_1nfvN00 (N:3-172)
1h: CATH_1nfvP00 (P:3-172)
1i: CATH_1nfvO00 (O:4-172)
1j: CATH_1nfvB00 (B:3-172)
1k: CATH_1nfvC00 (C:3-172)
1l: CATH_1nfvD00 (D:3-172)
1m: CATH_1nfvE00 (E:3-172)
1n: CATH_1nfvF00 (F:3-172)
1o: CATH_1nfvH00 (H:3-172)
1p: CATH_1nfvI00 (I:3-172)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Desulfovibrio desulfuricans. Organism_taxid: 876. Strain: atcc 27774
(3)
1a
1nfvA00
A:4-172
1b
1nfvG00
G:4-172
1c
1nfvJ00
J:3-172
1d
1nfvK00
K:3-172
1e
1nfvL00
L:3-172
1f
1nfvM00
M:3-172
1g
1nfvN00
N:3-172
1h
1nfvP00
P:3-172
1i
1nfvO00
O:4-172
1j
1nfvB00
B:3-172
1k
1nfvC00
C:3-172
1l
1nfvD00
D:3-172
1m
1nfvE00
E:3-172
1n
1nfvF00
F:3-172
1o
1nfvH00
H:3-172
1p
1nfvI00
I:3-172
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Ferritin_1nfvP01 (P:13-149)
1b: PFAM_Ferritin_1nfvP02 (P:13-149)
1c: PFAM_Ferritin_1nfvP03 (P:13-149)
1d: PFAM_Ferritin_1nfvP04 (P:13-149)
1e: PFAM_Ferritin_1nfvP05 (P:13-149)
1f: PFAM_Ferritin_1nfvP06 (P:13-149)
1g: PFAM_Ferritin_1nfvP07 (P:13-149)
1h: PFAM_Ferritin_1nfvP08 (P:13-149)
1i: PFAM_Ferritin_1nfvP09 (P:13-149)
1j: PFAM_Ferritin_1nfvP10 (P:13-149)
1k: PFAM_Ferritin_1nfvP11 (P:13-149)
1l: PFAM_Ferritin_1nfvP12 (P:13-149)
1m: PFAM_Ferritin_1nfvP13 (P:13-149)
1n: PFAM_Ferritin_1nfvP14 (P:13-149)
1o: PFAM_Ferritin_1nfvP15 (P:13-149)
1p: PFAM_Ferritin_1nfvP16 (P:13-149)
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)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949)
(3)
1a
Ferritin-1nfvP01
P:13-149
1b
Ferritin-1nfvP02
P:13-149
1c
Ferritin-1nfvP03
P:13-149
1d
Ferritin-1nfvP04
P:13-149
1e
Ferritin-1nfvP05
P:13-149
1f
Ferritin-1nfvP06
P:13-149
1g
Ferritin-1nfvP07
P:13-149
1h
Ferritin-1nfvP08
P:13-149
1i
Ferritin-1nfvP09
P:13-149
1j
Ferritin-1nfvP10
P:13-149
1k
Ferritin-1nfvP11
P:13-149
1l
Ferritin-1nfvP12
P:13-149
1m
Ferritin-1nfvP13
P:13-149
1n
Ferritin-1nfvP14
P:13-149
1o
Ferritin-1nfvP15
P:13-149
1p
Ferritin-1nfvP16
P:13-149
[
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