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1NF4
Biol. Unit 1
Info
Asym.Unit (505 KB)
Biol.Unit 1 (484 KB)
Biol.Unit 2 (726 KB)
Biol.Unit 3 (719 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE DESULFOVIBRIO DESULFURICANS BACTERIOFERRITIN: THE DIIRON SITE IN DIFFERENT STATES (REDUCED STRUCTURE)
Authors
:
S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier, M. Teixeira, P. Lindley, M. A. Carrondo
Date
:
13 Dec 02 (Deposition) - 01 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Biol. Unit 2: A,B,G,H,I,J,M,N (3x)
Biol. Unit 3: C,D,E,F,K,L,O,P (3x)
Keywords
:
Bacterioferritin, Active As 24-Mer, Diiron Centre, Fe-Coproporphyrin Iii Haem Cofactor, Iron Storage-Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Macedo, C. V. Romao, E. Mitchell, P. M. Matias, M. Y. Liu, A. V. Xavier J. Legall, M. Teixeira, P. Lindley, M. A. Carrondo
The Nature Of The Di-Iron Site In The Bacterioferritin From Desulfovibrio Desulfuricans
Nat. Struct. Biol. V. 10 285 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 96)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1aa: FE (II) ION (FE2aa)
1ab: FE (II) ION (FE2ab)
1ac: FE (II) ION (FE2ac)
1ad: FE (II) ION (FE2ad)
1ae: FE (II) ION (FE2ae)
1af: FE (II) ION (FE2af)
1b: FE (II) ION (FE2b)
1c: FE (II) ION (FE2c)
1d: FE (II) ION (FE2d)
1e: FE (II) ION (FE2e)
1f: FE (II) ION (FE2f)
1g: FE (II) ION (FE2g)
1h: FE (II) ION (FE2h)
1i: FE (II) ION (FE2i)
1j: FE (II) ION (FE2j)
1k: FE (II) ION (FE2k)
1l: FE (II) ION (FE2l)
1m: FE (II) ION (FE2m)
1n: FE (II) ION (FE2n)
1o: FE (II) ION (FE2o)
1p: FE (II) ION (FE2p)
1q: FE (II) ION (FE2q)
1r: FE (II) ION (FE2r)
1s: FE (II) ION (FE2s)
1t: FE (II) ION (FE2t)
1u: FE (II) ION (FE2u)
1v: FE (II) ION (FE2v)
1w: FE (II) ION (FE2w)
1x: FE (II) ION (FE2x)
1y: FE (II) ION (FE2y)
1z: FE (II) ION (FE2z)
2a: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECa)
2b: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECb)
2c: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECc)
2d: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECd)
2e: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECe)
2f: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECf)
2g: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECg)
2h: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6... (FECh)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3af: SULFATE ION (SO4af)
3ag: SULFATE ION (SO4ag)
3ah: SULFATE ION (SO4ah)
3ai: SULFATE ION (SO4ai)
3aj: SULFATE ION (SO4aj)
3ak: SULFATE ION (SO4ak)
3al: SULFATE ION (SO4al)
3am: SULFATE ION (SO4am)
3an: SULFATE ION (SO4an)
3ao: SULFATE ION (SO4ao)
3ap: SULFATE ION (SO4ap)
3aq: SULFATE ION (SO4aq)
3ar: SULFATE ION (SO4ar)
3as: SULFATE ION (SO4as)
3at: SULFATE ION (SO4at)
3au: SULFATE ION (SO4au)
3av: SULFATE ION (SO4av)
3aw: SULFATE ION (SO4aw)
3ax: SULFATE ION (SO4ax)
3ay: SULFATE ION (SO4ay)
3az: SULFATE ION (SO4az)
3b: SULFATE ION (SO4b)
3ba: SULFATE ION (SO4ba)
3bb: SULFATE ION (SO4bb)
3bc: SULFATE ION (SO4bc)
3bd: SULFATE ION (SO4bd)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE2
32
Ligand/Ion
FE (II) ION
2
FEC
8
Ligand/Ion
1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONICACID FERROUS COMPLEX
3
SO4
56
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(96, 96)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
87: JC6 (SOFTWARE)
88: JC7 (SOFTWARE)
89: JC8 (SOFTWARE)
90: JC9 (SOFTWARE)
91: KC1 (SOFTWARE)
92: KC2 (SOFTWARE)
93: KC3 (SOFTWARE)
94: KC4 (SOFTWARE)
95: KC5 (SOFTWARE)
96: KC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:23 , GLU A:56 , HIS A:59 , GLU A:132 , HOH A:1094
BINDING SITE FOR RESIDUE FE2 A 200
02
AC2
SOFTWARE
GLU A:56 , GLU A:99 , GLU A:132 , HIS A:135
BINDING SITE FOR RESIDUE FE2 A 201
03
AC3
SOFTWARE
LYS A:50 , SER A:163 , THR A:164 , GLY A:165 , HOH A:1054
BINDING SITE FOR RESIDUE SO4 A 1001
04
AC4
SOFTWARE
SER A:144 , ASN A:148 , HOH B:1201
BINDING SITE FOR RESIDUE SO4 A 1003
05
AC5
SOFTWARE
THR A:76 , GLN A:77 , LYS B:78 , LYS B:81 , VAL B:82 , HOH B:1154 , HOH B:1202 , HOH B:1216
BINDING SITE FOR RESIDUE SO4 B 1005
06
AC6
SOFTWARE
PRO A:161 , SER A:162 , SER A:163
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
GLU B:23 , GLU B:56 , HIS B:59 , GLU B:132 , HOH B:1190
BINDING SITE FOR RESIDUE FE2 B 200
08
AC8
SOFTWARE
GLU B:56 , GLU B:99 , GLU B:132 , HIS B:135 , HOH B:1208
BINDING SITE FOR RESIDUE FE2 B 201
09
AC9
SOFTWARE
FEC A:1007 , LYS B:50 , SER B:163 , THR B:164 , HOH B:1125 , HOH B:1218 , HOH B:1219
BINDING SITE FOR RESIDUE SO4 B 1101
10
BC1
SOFTWARE
SER B:144 , ASN B:148
BINDING SITE FOR RESIDUE SO4 B 1103
11
BC2
SOFTWARE
LYS B:114 , LYS G:114 , LYS N:114
BINDING SITE FOR RESIDUE SO4 B 1104
12
BC3
SOFTWARE
PRO B:161 , SER B:162 , SER B:163 , HOH B:1199 , HOH B:1207
BINDING SITE FOR RESIDUE SO4 B 1106
13
BC4
SOFTWARE
GLU C:23 , GLU C:56 , HIS C:59 , GLU C:132 , HOH C:1250
BINDING SITE FOR RESIDUE FE2 C 200
14
BC5
SOFTWARE
GLU C:56 , GLU C:99 , GLU C:132 , HIS C:135
BINDING SITE FOR RESIDUE FE2 C 201
15
BC6
SOFTWARE
LYS C:50 , SER C:163 , THR C:164 , GLY C:165 , FEC C:1207
BINDING SITE FOR RESIDUE SO4 C 1201
16
BC7
SOFTWARE
SER C:144 , ASN C:148
BINDING SITE FOR RESIDUE SO4 C 1203
17
BC8
SOFTWARE
LYS C:114
BINDING SITE FOR RESIDUE SO4 C 1204
18
BC9
SOFTWARE
PRO C:161 , SER C:162 , SER C:163 , HOH C:9486
BINDING SITE FOR RESIDUE SO4 C 1206
19
CC1
SOFTWARE
GLU D:23 , GLU D:56 , HIS D:59 , GLU D:132 , HOH D:1350
BINDING SITE FOR RESIDUE FE2 D 200
20
CC2
SOFTWARE
GLU D:56 , GLU D:99 , GLU D:132 , HIS D:135
BINDING SITE FOR RESIDUE FE2 D 201
21
CC3
SOFTWARE
LYS D:50 , SER D:163 , THR D:164 , GLY D:165 , HOH D:9670
BINDING SITE FOR RESIDUE SO4 D 1301
22
CC4
SOFTWARE
SER D:144 , LYS D:147 , ASN D:148 , HOH D:291
BINDING SITE FOR RESIDUE SO4 D 1303
23
CC5
SOFTWARE
LYS E:114 , HOH E:9338 , LYS O:114
BINDING SITE FOR RESIDUE SO4 E 1304
24
CC6
SOFTWARE
PRO D:161 , SER D:162 , SER D:163 , HOH D:9704
BINDING SITE FOR RESIDUE SO4 D 1306
25
CC7
SOFTWARE
GLU E:23 , GLU E:56 , HIS E:59 , GLU E:132 , HOH E:1450
BINDING SITE FOR RESIDUE FE2 E 200
26
CC8
SOFTWARE
GLU E:56 , GLU E:99 , GLU E:132 , HIS E:135 , HOH E:9734
BINDING SITE FOR RESIDUE FE2 E 201
27
CC9
SOFTWARE
SER E:144 , LYS E:147 , ASN E:148
BINDING SITE FOR RESIDUE SO4 E 1403
28
DC1
SOFTWARE
PRO E:161 , SER E:162 , SER E:163
BINDING SITE FOR RESIDUE SO4 E 1406
29
DC2
SOFTWARE
GLU F:23 , GLU F:56 , HIS F:59 , GLU F:132 , HOH F:1550
BINDING SITE FOR RESIDUE FE2 F 200
30
DC3
SOFTWARE
GLU F:56 , GLU F:99 , GLU F:132 , HIS F:135
BINDING SITE FOR RESIDUE FE2 F 201
31
DC4
SOFTWARE
FEC E:1407 , LYS F:50 , SER F:163 , THR F:164 , GLY F:165 , HOH F:448 , HOH F:450
BINDING SITE FOR RESIDUE SO4 F 1501
32
DC5
SOFTWARE
ASN F:4 , ARG F:5 , HOH F:521
BINDING SITE FOR RESIDUE SO4 F 1502
33
DC6
SOFTWARE
LYS F:114 , LYS K:114 , LYS P:114
BINDING SITE FOR RESIDUE SO4 P 1504
34
DC7
SOFTWARE
PRO F:161 , SER F:162 , SER F:163 , HOH F:9473
BINDING SITE FOR RESIDUE SO4 F 1506
35
DC8
SOFTWARE
GLU G:23 , GLU G:56 , HIS G:59 , GLU G:132 , HOH G:1650
BINDING SITE FOR RESIDUE FE2 G 200
36
DC9
SOFTWARE
GLU G:56 , GLU G:99 , GLU G:132 , HIS G:135
BINDING SITE FOR RESIDUE FE2 G 201
37
EC1
SOFTWARE
LYS G:50 , SER G:162 , SER G:163 , THR G:164 , HOH G:622 , HOH G:9629
BINDING SITE FOR RESIDUE SO4 G 1601
38
EC2
SOFTWARE
SER G:144 , ASN G:148
BINDING SITE FOR RESIDUE SO4 G 1603
39
EC3
SOFTWARE
PRO G:161 , SER G:162 , SER G:163 , HOH G:9475
BINDING SITE FOR RESIDUE SO4 G 1606
40
EC4
SOFTWARE
GLU H:23 , GLU H:56 , HIS H:59 , GLU H:132 , HOH H:1750
BINDING SITE FOR RESIDUE FE2 H 200
41
EC5
SOFTWARE
GLU H:56 , GLU H:99 , GLU H:132 , HIS H:135
BINDING SITE FOR RESIDUE FE2 H 201
42
EC6
SOFTWARE
LYS H:50 , SER H:163 , THR H:164 , GLY H:165 , HOH H:9269
BINDING SITE FOR RESIDUE SO4 H 1701
43
EC7
SOFTWARE
ASN H:4 , ARG H:5
BINDING SITE FOR RESIDUE SO4 H 1702
44
EC8
SOFTWARE
SER H:144 , ASN H:148
BINDING SITE FOR RESIDUE SO4 H 1703
45
EC9
SOFTWARE
LYS H:114 , LYS I:114 , HOH I:9707 , LYS M:114
BINDING SITE FOR RESIDUE SO4 I 1704
46
FC1
SOFTWARE
PRO H:161 , SER H:162 , SER H:163
BINDING SITE FOR RESIDUE SO4 H 1706
47
FC2
SOFTWARE
GLU I:23 , GLU I:56 , HIS I:59 , GLU I:132 , HOH I:1850
BINDING SITE FOR RESIDUE FE2 I 200
48
FC3
SOFTWARE
GLU I:56 , GLU I:99 , GLU I:132 , HIS I:135
BINDING SITE FOR RESIDUE FE2 I 201
49
FC4
SOFTWARE
LYS I:50 , THR I:164 , GLY I:165 , HOH I:768 , HOH I:9464
BINDING SITE FOR RESIDUE SO4 I 1801
50
FC5
SOFTWARE
ASN I:4 , ARG I:5 , ASN L:4 , ARG L:5 , SO4 L:2102 , HOH L:9529
BINDING SITE FOR RESIDUE SO4 I 1802
51
FC6
SOFTWARE
SER I:144 , LYS I:147 , ASN I:148
BINDING SITE FOR RESIDUE SO4 I 1803
52
FC7
SOFTWARE
PRO I:161 , SER I:162 , SER I:163 , HOH I:827
BINDING SITE FOR RESIDUE SO4 I 1804
53
FC8
SOFTWARE
GLU J:23 , GLU J:56 , HIS J:59 , GLU J:132 , HOH J:1950
BINDING SITE FOR RESIDUE FE2 J 200
54
FC9
SOFTWARE
GLU J:56 , GLU J:99 , GLU J:132 , HIS J:135
BINDING SITE FOR RESIDUE FE2 J 201
55
GC1
SOFTWARE
FEC I:1805 , LYS J:50 , THR J:164 , GLY J:165 , HOH J:723
BINDING SITE FOR RESIDUE SO4 J 1901
56
GC2
SOFTWARE
LYS J:114
BINDING SITE FOR RESIDUE SO4 J 1904
57
GC3
SOFTWARE
PRO J:161 , SER J:162 , SER J:163
BINDING SITE FOR RESIDUE SO4 J 1906
58
GC4
SOFTWARE
GLU K:23 , GLU K:56 , HIS K:59 , GLU K:132 , HOH K:2050
BINDING SITE FOR RESIDUE FE2 K 200
59
GC5
SOFTWARE
GLU K:56 , GLU K:99 , GLU K:132 , HIS K:135 , HOH K:9504
BINDING SITE FOR RESIDUE FE2 K 201
60
GC6
SOFTWARE
LYS K:50 , SER K:163 , THR K:164 , HOH K:9313
BINDING SITE FOR RESIDUE SO4 K 2001
61
GC7
SOFTWARE
SER K:144 , LYS K:147 , ASN K:148
BINDING SITE FOR RESIDUE SO4 K 2003
62
GC8
SOFTWARE
PRO K:161 , SER K:162 , SER K:163 , HOH K:9678 , HOH K:9705
BINDING SITE FOR RESIDUE SO4 K 2006
63
GC9
SOFTWARE
GLU L:23 , GLU L:56 , HIS L:59 , GLU L:132 , HOH L:2150
BINDING SITE FOR RESIDUE FE2 L 200
64
HC1
SOFTWARE
GLU L:56 , GLU L:99 , GLU L:132 , HIS L:135
BINDING SITE FOR RESIDUE FE2 L 201
65
HC2
SOFTWARE
LYS L:50 , SER L:162 , SER L:163 , THR L:164 , HOH L:891 , HOH L:9317
BINDING SITE FOR RESIDUE SO4 L 2101
66
HC3
SOFTWARE
ASN I:4 , ARG I:5 , SO4 I:1802 , ASN L:4 , ARG L:5 , HOH L:971 , HOH L:9529
BINDING SITE FOR RESIDUE SO4 L 2102
67
HC4
SOFTWARE
LYS L:114 , HOH L:9713
BINDING SITE FOR RESIDUE SO4 L 2104
68
HC5
SOFTWARE
PRO L:161 , SER L:162 , SER L:163
BINDING SITE FOR RESIDUE SO4 L 2106
69
HC6
SOFTWARE
GLU M:23 , GLU M:56 , HIS M:59 , GLU M:132 , HOH M:2250
BINDING SITE FOR RESIDUE FE2 M 200
70
HC7
SOFTWARE
GLU M:56 , GLU M:99 , GLU M:132 , HIS M:135
BINDING SITE FOR RESIDUE FE2 M 201
71
HC8
SOFTWARE
LYS M:50 , SER M:163 , THR M:164 , HOH M:9004 , HOH M:9457
BINDING SITE FOR RESIDUE SO4 M 2201
72
HC9
SOFTWARE
ASN M:4 , ARG M:5
BINDING SITE FOR RESIDUE SO4 M 2202
73
IC1
SOFTWARE
HOH L:9319 , SER M:144 , LYS M:147 , ASN M:148
BINDING SITE FOR RESIDUE SO4 M 2203
74
IC2
SOFTWARE
PRO M:161 , SER M:162 , SER M:163
BINDING SITE FOR RESIDUE SO4 M 2206
75
IC3
SOFTWARE
GLU N:23 , GLU N:56 , HIS N:59 , GLU N:132 , HOH N:2319
BINDING SITE FOR RESIDUE FE2 N 200
76
IC4
SOFTWARE
GLU N:56 , GLU N:99 , GLU N:132 , HIS N:135 , HOH N:2408
BINDING SITE FOR RESIDUE FE2 N 201
77
IC5
SOFTWARE
LYS N:50 , SER N:163 , THR N:164 , HOH N:2335 , HOH N:2413
BINDING SITE FOR RESIDUE SO4 N 2301
78
IC6
SOFTWARE
SER N:144 , ASN N:148
BINDING SITE FOR RESIDUE SO4 N 2303
79
IC7
SOFTWARE
PRO N:161 , SER N:162 , SER N:163 , HOH N:2403
BINDING SITE FOR RESIDUE SO4 N 2306
80
IC8
SOFTWARE
GLU O:23 , GLU O:56 , HIS O:59 , GLU O:132 , HOH O:2450
BINDING SITE FOR RESIDUE FE2 O 200
81
IC9
SOFTWARE
GLU O:56 , GLU O:99 , GLU O:132 , HIS O:135
BINDING SITE FOR RESIDUE FE2 O 201
82
JC1
SOFTWARE
HOH F:9447 , SER O:144 , ASN O:148
BINDING SITE FOR RESIDUE SO4 O 2403
83
JC2
SOFTWARE
PRO O:161 , SER O:162 , SER O:163
BINDING SITE FOR RESIDUE SO4 O 2406
84
JC3
SOFTWARE
GLU P:23 , GLU P:56 , HIS P:59 , GLU P:132 , HOH P:2550
BINDING SITE FOR RESIDUE FE2 P 200
85
JC4
SOFTWARE
GLU P:56 , GLU P:99 , GLU P:132 , HIS P:135
BINDING SITE FOR RESIDUE FE2 P 201
86
JC5
SOFTWARE
LYS P:50 , SER P:163 , THR P:164 , FEC P:2507 , HOH P:9204 , HOH P:9364
BINDING SITE FOR RESIDUE SO4 P 2501
87
JC6
SOFTWARE
SER P:144 , LYS P:147 , ASN P:148
BINDING SITE FOR RESIDUE SO4 P 2503
88
JC7
SOFTWARE
PRO P:161 , SER P:162 , SER P:163
BINDING SITE FOR RESIDUE SO4 P 2506
89
JC8
SOFTWARE
ARG A:20 , HIS A:28 , TYR A:35 , LYS A:50 , MET A:57 , GLU A:61 , SER A:168 , LYS A:169 , HOH A:1015 , HOH A:1017 , ARG B:20 , HIS B:28 , MET B:31 , TYR B:35 , LYS B:50 , MET B:57 , GLU B:61 , SER B:168 , SO4 B:1101 , HOH B:1220
BINDING SITE FOR RESIDUE FEC A 1007
90
JC9
SOFTWARE
ARG C:20 , ILE C:27 , HIS C:28 , MET C:31 , TYR C:35 , LYS C:50 , MET C:57 , ARG C:58 , GLU C:61 , SER C:168 , LYS C:169 , HOH C:313 , HOH C:316 , SO4 C:1201 , ARG D:20 , HIS D:28 , MET D:31 , TYR D:35 , LYS D:50 , MET D:57 , GLU D:61 , SER D:168
BINDING SITE FOR RESIDUE FEC C 1207
91
KC1
SOFTWARE
ARG E:20 , HIS E:28 , MET E:31 , TYR E:35 , LYS E:50 , ILE E:54 , MET E:57 , GLU E:61 , ALA E:167 , SER E:168 , LYS E:169 , HOH E:433 , HOH E:436 , ARG F:20 , HIS F:28 , TYR F:35 , LYS F:50 , MET F:57 , GLU F:61 , SER F:168 , LYS F:169 , SO4 F:1501 , HOH F:9695
BINDING SITE FOR RESIDUE FEC E 1407
92
KC2
SOFTWARE
ARG G:20 , HIS G:28 , MET G:31 , TYR G:35 , LYS G:50 , MET G:57 , GLU G:61 , SER G:168 , LYS G:169 , HOH G:561 , HOH G:564 , ARG H:20 , HIS H:28 , MET H:31 , TYR H:35 , LYS H:50 , MET H:57 , GLU H:61 , SER H:168 , LYS H:169 , HOH H:9269
BINDING SITE FOR RESIDUE FEC G 1607
93
KC3
SOFTWARE
ARG I:20 , HIS I:28 , MET I:31 , TYR I:35 , LYS I:50 , MET I:57 , GLU I:61 , ALA I:167 , SER I:168 , LYS I:169 , HOH I:704 , HOH I:707 , HOH I:9611 , ARG J:20 , HIS J:28 , MET J:31 , TYR J:35 , LYS J:50 , MET J:57 , ARG J:58 , GLU J:61 , ALA J:167 , SER J:168 , SO4 J:1901
BINDING SITE FOR RESIDUE FEC I 1805
94
KC4
SOFTWARE
ARG K:20 , HIS K:28 , MET K:31 , TYR K:35 , LYS K:50 , ILE K:54 , MET K:57 , GLU K:61 , SER K:168 , ARG L:20 , ILE L:27 , HIS L:28 , MET L:31 , TYR L:35 , LYS L:50 , MET L:57 , GLU L:61 , SER L:168 , LYS L:169 , HOH L:868 , HOH L:871 , HOH L:9452 , HOH L:9612 , HOH L:9620 , HOH L:9682
BINDING SITE FOR RESIDUE FEC L 2107
95
KC5
SOFTWARE
ARG M:20 , HIS M:28 , MET M:31 , TYR M:35 , LYS M:50 , MET M:57 , ARG M:58 , GLU M:61 , SER M:168 , LYS M:169 , HOH M:8936 , HOH M:8939 , HOH M:9332 , HOH M:9603 , ARG N:20 , HIS N:28 , MET N:31 , TYR N:35 , LYS N:50 , MET N:57 , GLU N:61 , ALA N:167 , SER N:168 , LYS N:169
BINDING SITE FOR RESIDUE FEC M 2207
96
KC6
SOFTWARE
ARG O:20 , HIS O:28 , MET O:31 , TYR O:35 , LYS O:50 , MET O:57 , GLU O:61 , SER O:168 , ARG P:20 , HIS P:28 , MET P:31 , TYR P:35 , LYS P:50 , MET P:57 , GLU P:61 , ALA P:167 , SER P:168 , LYS P:169 , SO4 P:2501 , HOH P:9091 , HOH P:9093 , HOH P:9570
BINDING SITE FOR RESIDUE FEC P 2507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:6-150,B:6-150,C:6-150,D:6-150,E:...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
BFR_DESDA
6-150
16
A:6-150
B:6-150
C:6-150
D:6-150
E:6-150
F:6-150
G:6-150
H:6-150
I:6-150
J:6-150
K:6-150
L:6-150
M:6-150
N:6-150
O:6-150
P:6-150
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1nf4a_ (A:)
1b: SCOP_d1nf4b_ (B:)
1c: SCOP_d1nf4k_ (K:)
1d: SCOP_d1nf4l_ (L:)
1e: SCOP_d1nf4m_ (M:)
1f: SCOP_d1nf4n_ (N:)
1g: SCOP_d1nf4o_ (O:)
1h: SCOP_d1nf4p_ (P:)
1i: SCOP_d1nf4c_ (C:)
1j: SCOP_d1nf4d_ (D:)
1k: SCOP_d1nf4e_ (E:)
1l: SCOP_d1nf4f_ (F:)
1m: SCOP_d1nf4g_ (G:)
1n: SCOP_d1nf4h_ (H:)
1o: SCOP_d1nf4i_ (I:)
1p: SCOP_d1nf4j_ (J:)
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Bacterioferritin (cytochrome b1)
(19)
Desulfovibrio desulfuricans [TaxId: 876]
(3)
1a
d1nf4a_
A:
1b
d1nf4b_
B:
1c
d1nf4k_
K:
1d
d1nf4l_
L:
1e
d1nf4m_
M:
1f
d1nf4n_
N:
1g
d1nf4o_
O:
1h
d1nf4p_
P:
1i
d1nf4c_
C:
1j
d1nf4d_
D:
1k
d1nf4e_
E:
1l
d1nf4f_
F:
1m
d1nf4g_
G:
1n
d1nf4h_
H:
1o
d1nf4i_
I:
1p
d1nf4j_
J:
[
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1nf4A00 (A:4-172)
1b: CATH_1nf4B00 (B:4-172)
1c: CATH_1nf4C00 (C:4-172)
1d: CATH_1nf4D00 (D:4-172)
1e: CATH_1nf4E00 (E:4-172)
1f: CATH_1nf4F00 (F:4-172)
1g: CATH_1nf4G00 (G:4-172)
1h: CATH_1nf4J00 (J:4-172)
1i: CATH_1nf4K00 (K:4-172)
1j: CATH_1nf4N00 (N:4-172)
1k: CATH_1nf4O00 (O:4-172)
1l: CATH_1nf4H00 (H:3-172)
1m: CATH_1nf4I00 (I:3-172)
1n: CATH_1nf4L00 (L:3-172)
1o: CATH_1nf4M00 (M:3-172)
1p: CATH_1nf4P00 (P:3-172)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Desulfovibrio desulfuricans. Organism_taxid: 876. Strain: atcc 27774
(3)
1a
1nf4A00
A:4-172
1b
1nf4B00
B:4-172
1c
1nf4C00
C:4-172
1d
1nf4D00
D:4-172
1e
1nf4E00
E:4-172
1f
1nf4F00
F:4-172
1g
1nf4G00
G:4-172
1h
1nf4J00
J:4-172
1i
1nf4K00
K:4-172
1j
1nf4N00
N:4-172
1k
1nf4O00
O:4-172
1l
1nf4H00
H:3-172
1m
1nf4I00
I:3-172
1n
1nf4L00
L:3-172
1o
1nf4M00
M:3-172
1p
1nf4P00
P:3-172
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Ferritin_1nf4P01 (P:13-149)
1b: PFAM_Ferritin_1nf4P02 (P:13-149)
1c: PFAM_Ferritin_1nf4P03 (P:13-149)
1d: PFAM_Ferritin_1nf4P04 (P:13-149)
1e: PFAM_Ferritin_1nf4P05 (P:13-149)
1f: PFAM_Ferritin_1nf4P06 (P:13-149)
1g: PFAM_Ferritin_1nf4P07 (P:13-149)
1h: PFAM_Ferritin_1nf4P08 (P:13-149)
1i: PFAM_Ferritin_1nf4P09 (P:13-149)
1j: PFAM_Ferritin_1nf4P10 (P:13-149)
1k: PFAM_Ferritin_1nf4P11 (P:13-149)
1l: PFAM_Ferritin_1nf4P12 (P:13-149)
1m: PFAM_Ferritin_1nf4P13 (P:13-149)
1n: PFAM_Ferritin_1nf4P14 (P:13-149)
1o: PFAM_Ferritin_1nf4P15 (P:13-149)
1p: PFAM_Ferritin_1nf4P16 (P:13-149)
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Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949)
(3)
1a
Ferritin-1nf4P01
P:13-149
1b
Ferritin-1nf4P02
P:13-149
1c
Ferritin-1nf4P03
P:13-149
1d
Ferritin-1nf4P04
P:13-149
1e
Ferritin-1nf4P05
P:13-149
1f
Ferritin-1nf4P06
P:13-149
1g
Ferritin-1nf4P07
P:13-149
1h
Ferritin-1nf4P08
P:13-149
1i
Ferritin-1nf4P09
P:13-149
1j
Ferritin-1nf4P10
P:13-149
1k
Ferritin-1nf4P11
P:13-149
1l
Ferritin-1nf4P12
P:13-149
1m
Ferritin-1nf4P13
P:13-149
1n
Ferritin-1nf4P14
P:13-149
1o
Ferritin-1nf4P15
P:13-149
1p
Ferritin-1nf4P16
P:13-149
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