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1N80
Asym. Unit
Info
Asym.Unit (230 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (114 KB)
Biol.Unit 3 (224 KB)
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(1)
Title
:
BACTERIOPHAGE T4 BASEPLATE STRUCTURAL PROTEIN GP8
Authors
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Date
:
18 Nov 02 (Deposition) - 10 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Bacteriophage T4, Baseplate, Dimer, Beta Sandwich, Halide Binding, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Structure And Location Of Gene Product 8 In The Bacteriophage T4 Baseplate
J. Mol. Biol. V. 328 821 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 32)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1ae: CHLORIDE ION (CLae)
1af: CHLORIDE ION (CLaf)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
32
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:102 , PRO A:103 , TYR A:104 , THR A:105
BINDING SITE FOR RESIDUE CL A 335
02
AC2
SOFTWARE
HOH A:348 , ARG B:92
BINDING SITE FOR RESIDUE CL B 335
03
AC3
SOFTWARE
LEU A:22 , ASN A:23 , ASN A:26 , ASN B:35
BINDING SITE FOR RESIDUE CL A 336
04
AC4
SOFTWARE
SER A:64 , VAL A:65
BINDING SITE FOR RESIDUE CL A 337
05
AC5
SOFTWARE
ASN A:26
BINDING SITE FOR RESIDUE CL A 338
06
AC6
SOFTWARE
ARG A:202
BINDING SITE FOR RESIDUE CL A 340
07
AC7
SOFTWARE
PRO A:83 , SER A:84 , HOH A:400
BINDING SITE FOR RESIDUE CL A 341
08
AC8
SOFTWARE
ALA A:281 , LYS A:282 , MET A:303
BINDING SITE FOR RESIDUE CL A 342
09
AC9
SOFTWARE
HOH A:468
BINDING SITE FOR RESIDUE CL A 343
10
BC1
SOFTWARE
ASP B:102 , PRO B:103 , TYR B:104 , THR B:105
BINDING SITE FOR RESIDUE CL B 336
11
BC2
SOFTWARE
SER B:64 , VAL B:65
BINDING SITE FOR RESIDUE CL B 337
12
BC3
SOFTWARE
GLU B:214 , HOH B:411
BINDING SITE FOR RESIDUE CL B 338
13
BC4
SOFTWARE
LYS A:15 , ARG A:241
BINDING SITE FOR RESIDUE CL A 344
14
BC5
SOFTWARE
SER B:84
BINDING SITE FOR RESIDUE CL B 339
15
BC6
SOFTWARE
ALA B:281 , LYS B:282 , MET B:303
BINDING SITE FOR RESIDUE CL B 340
16
BC7
SOFTWARE
PRO C:103 , TYR C:104 , HOH C:379
BINDING SITE FOR RESIDUE CL C 335
17
BC8
SOFTWARE
ARG D:92 , HOH D:345
BINDING SITE FOR RESIDUE CL D 335
18
BC9
SOFTWARE
LEU C:22 , ASN C:23 , ASN C:26
BINDING SITE FOR RESIDUE CL C 336
19
CC1
SOFTWARE
TRP C:212 , PRO C:213 , GLU C:214
BINDING SITE FOR RESIDUE CL C 337
20
CC2
SOFTWARE
HOH C:358
BINDING SITE FOR RESIDUE CL C 338
21
CC3
SOFTWARE
ARG C:202 , HOH C:438
BINDING SITE FOR RESIDUE CL C 339
22
CC4
SOFTWARE
PRO C:83 , SER C:84
BINDING SITE FOR RESIDUE CL C 340
23
CC5
SOFTWARE
LYS C:282
BINDING SITE FOR RESIDUE CL C 341
24
CC6
SOFTWARE
ASP D:102 , PRO D:103 , TYR D:104 , THR D:105
BINDING SITE FOR RESIDUE CL D 336
25
CC7
SOFTWARE
ASN C:35 , HOH C:378 , LEU D:22 , ASN D:23 , ASN D:26
BINDING SITE FOR RESIDUE CL D 337
26
CC8
SOFTWARE
LYS C:15 , LYS C:243
BINDING SITE FOR RESIDUE CL C 342
27
CC9
SOFTWARE
TRP D:212 , GLU D:214
BINDING SITE FOR RESIDUE CL D 338
28
DC1
SOFTWARE
ARG D:202
BINDING SITE FOR RESIDUE CL D 340
29
DC2
SOFTWARE
PRO D:83 , SER D:84
BINDING SITE FOR RESIDUE CL D 341
30
DC3
SOFTWARE
PRO D:83
BINDING SITE FOR RESIDUE CL D 342
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1n80a_ (A:)
1b: SCOP_d1n80b_ (B:)
1c: SCOP_d1n80c_ (C:)
1d: SCOP_d1n80d_ (D:)
View:
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Baseplate structural protein gp8
(3)
Superfamily
:
Baseplate structural protein gp8
(3)
Family
:
Baseplate structural protein gp8
(3)
Protein domain
:
Baseplate structural protein gp8
(3)
Bacteriophage T4 [TaxId: 10665]
(3)
1a
d1n80a_
A:
1b
d1n80b_
B:
1c
d1n80c_
C:
1d
d1n80d_
D:
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1n80A02 (A:88-245)
1b: CATH_1n80B02 (B:88-245)
1c: CATH_1n80C02 (C:88-245)
1d: CATH_1n80D02 (D:88-245)
2a: CATH_1n80A01 (A:12-87,A:246-334)
2b: CATH_1n80B01 (B:12-87,B:246-334)
2c: CATH_1n80C01 (C:12-87,C:246-334)
2d: CATH_1n80D01 (D:12-87,D:246-334)
View:
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Classes
(
)
(
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Architectures
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)
(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
baseplate structural protein gp8, domain 2
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 2
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
1a
1n80A02
A:88-245
1b
1n80B02
B:88-245
1c
1n80C02
C:88-245
1d
1n80D02
D:88-245
Architecture
:
Sandwich
(5577)
Topology
:
baseplate structural protein gp8, domain 1
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 1
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
2a
1n80A01
A:12-87,A:246-334
2b
1n80B01
B:12-87,B:246-334
2c
1n80C01
C:12-87,C:246-334
2d
1n80D01
D:12-87,D:246-334
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain D
Asymmetric Unit 1
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Asym.Unit (230 KB)
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