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Getting 'Exon' information from database.
1N1F
Asym. Unit
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Asym.Unit (33 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN INTERLEUKIN-19
Authors
:
C. Chang, E. Magracheva, S. Kozlov, S. Fong, G. Tobin, S. Kotenko, A. Wlo A. Zdanov
Date
:
17 Oct 02 (Deposition) - 04 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cytokine, Interleukin, Four Helix Bundle, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chang, E. Magracheva, S. Kozlov, S. Fong, G. Tobin, S. Kotenko, A. Wlodawer, A. Zdanov
Crystal Structure Of Interleukin-19 Defines A New Subfamily Of Helical Cytokines
J. Biol. Chem. V. 278 3308 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:24 , GLU A:25 , ASN A:38 , HOH A:599 , HOH A:653
BINDING SITE FOR RESIDUE NAG A 300
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013077 (S157S, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013077
F
175
S
IL19_HUMAN
Polymorphism
2243191
A
S
157
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: INTERLEUKIN_10 (A:52-72)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERLEUKIN_10
PS00520
Interleukin-10 family signature.
IL19_HUMAN
70-90
1
A:52-72
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Exons
(5, 5)
Info
All Exons
Exon 1.4a (A:4-30)
Exon 1.5 (A:31-52)
Exon 1.6a (A:53-103)
Exon 1.7 (A:104-128 (gaps))
Exon 1.8a (A:129-159)
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All Exon Boundaries
1: Boundary 1.3b/1.4a
2: Boundary 1.4a/1.5
3: Boundary 1.5/1.6a
4: Boundary 1.6a/1.7
5: Boundary 1.7/1.8a
6: Boundary 1.8a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000270218
2
ENSE00001510102
chr1:
207002222-207002471
250
IL19_HUMAN
-
0
0
-
-
1.3b
ENST00000270218
3b
ENSE00001510101
chr1:
207007059-207007745
687
IL19_HUMAN
-
0
0
-
-
1.4a
ENST00000270218
4a
ENSE00001634133
chr1:
207010006-207010151
146
IL19_HUMAN
1-48
48
1
A:4-30
27
1.5
ENST00000270218
5
ENSE00001069561
chr1:
207010303-207010368
66
IL19_HUMAN
49-70
22
1
A:31-52
22
1.6a
ENST00000270218
6a
ENSE00001069558
chr1:
207013195-207013347
153
IL19_HUMAN
71-121
51
1
A:53-103
51
1.7
ENST00000270218
7
ENSE00001069560
chr1:
207014349-207014423
75
IL19_HUMAN
122-146
25
1
A:104-128 (gaps)
25
1.8a
ENST00000270218
8a
ENSE00001885092
chr1:
207015872-207015967
96
IL19_HUMAN
147-177
31
1
A:129-159
31
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1n1fa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Interferons/interleukin-10 (IL-10)
(41)
Protein domain
:
Interleukin-19
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1n1fa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1n1fA00 (A:4-159)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1n1fA00
A:4-159
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_IL10_1n1fA01 (A:4-155)
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Select:
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Clans
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Families
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)
Organisms
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)
(
)
Clan
:
4H_Cytokine
(48)
Family
:
IL10
(7)
Homo sapiens (Human)
(3)
1a
IL10-1n1fA01
A:4-155
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Asymmetric Unit 1
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