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1N0Y
Biol. Unit 1
Info
Asym.Unit (67 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PB-BOUND CALMODULIN
Authors
:
M. A. Wilson, A. T. Brunger
Date
:
15 Oct 02 (Deposition) - 30 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Calmodulin, Lead, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. A. Wilson, A. T. Brunger
Domain Flexibility In The 1. 75 A Resolution Structure Of Pb2+-Calmodulin.
Acta Crystallogr. , Sect. D V. 59 1782 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CACODYLATE ION (CACa)
3a: LEAD (II) ION (PBa)
3b: LEAD (II) ION (PBb)
3c: LEAD (II) ION (PBc)
3d: LEAD (II) ION (PBd)
3e: LEAD (II) ION (PBe)
3f: LEAD (II) ION (PBf)
3g: LEAD (II) ION (PBg)
3h: LEAD (II) ION (PBh)
3i: LEAD (II) ION (PBi)
3j: LEAD (II) ION (PBj)
3k: LEAD (II) ION (PBk)
3l: LEAD (II) ION (PBl)
3m: LEAD (II) ION (PBm)
3n: LEAD (II) ION (PBn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
CAC
1
Ligand/Ion
CACODYLATE ION
3
PB
-1
Ligand/Ion
LEAD (II) ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:58 , ASP A:64 , GLU A:67 , GLU B:114
BINDING SITE FOR RESIDUE PB A 500
02
AC2
SOFTWARE
ASP A:56 , ASP A:58 , ASN A:60 , THR A:62 , ASP A:64 , GLU A:67
BINDING SITE FOR RESIDUE PB A 501
03
AC3
SOFTWARE
GLU A:7 , ASP A:58 , GLU B:114 , LYS B:115 , GLU B:120
BINDING SITE FOR RESIDUE PB A 502
04
AC4
SOFTWARE
ASP A:20 , ASP A:22 , ASP A:24 , THR A:26 , GLU A:31 , HOH A:1006
BINDING SITE FOR RESIDUE PB A 503
05
AC5
SOFTWARE
GLU A:11 , GLU A:14
BINDING SITE FOR RESIDUE PB A 504
06
AC6
SOFTWARE
GLU A:2 , HOH A:1031 , GLU B:84 , GLU B:87 , GLU B:123 , HOH B:2052
BINDING SITE FOR RESIDUE PB B 505
07
AC7
SOFTWARE
CAC A:1001 , ASP B:80 , GLU B:83 , GLU B:127
BINDING SITE FOR RESIDUE PB B 506
08
AC8
SOFTWARE
GLU A:2 , CAC A:1001 , HOH A:1020 , GLU B:83 , GLU B:84 , GLU B:123 , GLU B:127
BINDING SITE FOR RESIDUE PB A 507
09
BC1
SOFTWARE
CAC A:1001 , ASP B:80 , HOH B:2041
BINDING SITE FOR RESIDUE PB B 509
10
BC3
SOFTWARE
ALA A:1 , GLU A:2 , PB A:507 , HOH A:1020 , HOH A:1034 , ASP B:80 , GLU B:83 , GLU B:127 , PB B:506 , PB B:509
BINDING SITE FOR RESIDUE CAC A 1001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:80-87)
2: EF_HAND_1 (A:129-141)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM_PARTE
8-43
44-79
81-116
117-149
3
A:7-42
A:43-78
A:80-87
-
-
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM_PARTE
21-33
57-69
94-106
130-142
2
A:20-32
A:56-68
-
-
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1n0ya_ (A:)
1b: SCOP_d1n0yb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Ciliate (Paramecium tetraurelia) [TaxId: 5888]
(4)
1a
d1n0ya_
A:
1b
d1n0yb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1n0yA00 (A:1-87)
1b: CATH_1n0yB00 (B:69-147)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Paramecium tetraurelia. Organism_taxid: 5888.
(1)
1a
1n0yA00
A:1-87
1b
1n0yB00
B:69-147
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_EF_hand_5_1n0yB01 (B:79-145)
1b: PFAM_EF_hand_5_1n0yB02 (B:79-145)
1c: PFAM_EF_hand_5_1n0yB03 (B:79-145)
1d: PFAM_EF_hand_5_1n0yB04 (B:79-145)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Paramecium tetraurelia
(3)
1a
EF_hand_5-1n0yB01
B:79-145
1b
EF_hand_5-1n0yB02
B:79-145
1c
EF_hand_5-1n0yB03
B:79-145
1d
EF_hand_5-1n0yB04
B:79-145
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (67 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
Biol.Unit 2 (30 KB)
Header - Biol.Unit 2
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