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1MJG
Biol. Unit 1
Info
Asym.Unit (901 KB)
Biol.Unit 1 (457 KB)
Biol.Unit 2 (448 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BIFUNCTIONAL CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE(CODH/ACS) FROM MOORELLA THERMOACETICA (F. CLOSTRIDIUM THERMOACETICUM)
Authors
:
T. I. Doukov, T. M. Iverson, J. Seravalli, S. W. Ragsdale, C. L. Drennan
Date
:
27 Aug 02 (Deposition) - 28 Jan 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,M,N,O,P
Biol. Unit 1: A,B,M,N (1x)
Biol. Unit 2: C,D,O,P (1x)
Keywords
:
Carbon Monoxide Dehydrogenase(Codh), Acetyl-Coa Synthase (Acs), Nickel-Iron-Sulfur Cluster (Ni-Fe-S), Nickel-Coopper- Iron-Sulfur (Ni-Cu-Fe-S) Cluster, Hydrophobic Co Channel, Substrate Tunnel, Helical Domain, Rossmann Fold, Electron Transfer, Clostridium Thermoaceticum, Wood-Ljundahl Pathway, , Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. I. Doukov, T. M. Iverson, J. Seravalli, S. W. Ragsdale, C. L. Drennan
A Ni-Fe-Cu Center In A Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase
Science V. 298 567 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: COPPER (I) ION (CU1a)
2b: COPPER (I) ION (CU1b)
2c: COPPER (I) ION (CU1c)
2d: COPPER (I) ION (CU1d)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
3c: NICKEL (II) ION (NIc)
3d: NICKEL (II) ION (NId)
4a: IRON/SULFUR CLUSTER (SF4a)
4b: IRON/SULFUR CLUSTER (SF4b)
4c: IRON/SULFUR CLUSTER (SF4c)
4d: IRON/SULFUR CLUSTER (SF4d)
4e: IRON/SULFUR CLUSTER (SF4e)
4f: IRON/SULFUR CLUSTER (SF4f)
4g: IRON/SULFUR CLUSTER (SF4g)
4h: IRON/SULFUR CLUSTER (SF4h)
4i: IRON/SULFUR CLUSTER (SF4i)
4j: IRON/SULFUR CLUSTER (SF4j)
5a: FE(4)-NI(1)-S(4) CLUSTER (XCCa)
5b: FE(4)-NI(1)-S(4) CLUSTER (XCCb)
5c: FE(4)-NI(1)-S(4) CLUSTER (XCCc)
5d: FE(4)-NI(1)-S(4) CLUSTER (XCCd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CU1
2
Ligand/Ion
COPPER (I) ION
3
NI
-1
Ligand/Ion
NICKEL (II) ION
4
SF4
5
Ligand/Ion
IRON/SULFUR CLUSTER
5
XCC
2
Ligand/Ion
FE(4)-NI(1)-S(4) CLUSTER
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS M:509 , CYS M:595 , CYS M:597 , SF4 M:900 , NI M:902 , ACT M:950
BINDING SITE FOR RESIDUE CU1 M 901
02
AC2
SOFTWARE
CYS M:595 , GLY M:596 , CYS M:597 , PHE M:598 , CU1 M:901 , ACT M:950
BINDING SITE FOR RESIDUE NI M 902
03
AC3
SOFTWARE
VAL M:149 , PHE M:229 , CYS M:509 , CYS M:595 , CYS M:597 , CU1 M:901 , NI M:902
BINDING SITE FOR RESIDUE ACT M 950
04
AC4
SOFTWARE
CYS N:509 , CYS N:595 , CYS N:597 , SF4 N:900 , NI N:902 , ACT N:950
BINDING SITE FOR RESIDUE CU1 N 901
05
AC5
SOFTWARE
CYS N:595 , GLY N:596 , CYS N:597 , PHE N:598 , CU1 N:901 , ACT N:950
BINDING SITE FOR RESIDUE NI N 902
06
AC6
SOFTWARE
GLY N:145 , ILE N:146 , PHE N:229 , CYS N:509 , CYS N:595 , CYS N:597 , CU1 N:901 , NI N:902
BINDING SITE FOR RESIDUE ACT N 950
07
BC4
SOFTWARE
CYS A:59 , GLY A:62 , CYS A:67 , ARG A:69 , CYS B:59 , GLY B:62 , CYS B:67 , ARG B:69
BINDING SITE FOR RESIDUE SF4 A 700
08
BC5
SOFTWARE
CYS A:68 , CYS A:71 , GLY A:74 , CYS A:76 , CYS A:90 , ARG A:100 , MET A:221
BINDING SITE FOR RESIDUE SF4 A 750
09
BC6
SOFTWARE
HIS A:283 , CYS A:317 , CYS A:355 , GLY A:469 , CYS A:470 , CYS A:500 , CYS A:550 , SER A:585 , LYS A:587
BINDING SITE FOR RESIDUE XCC A 800
10
BC7
SOFTWARE
CYS B:68 , CYS B:71 , CYS B:76 , CYS B:90 , ARG B:100 , MET B:221
BINDING SITE FOR RESIDUE SF4 B 750
11
BC8
SOFTWARE
HIS B:283 , CYS B:317 , CYS B:355 , GLY B:469 , CYS B:470 , CYS B:500 , CYS B:550 , SER B:585 , LYS B:587
BINDING SITE FOR RESIDUE XCC B 800
12
CC5
SOFTWARE
ILE M:146 , CYS M:506 , CYS M:509 , CYS M:518 , LEU M:527 , CYS M:528 , CYS M:597 , CU1 M:901
BINDING SITE FOR RESIDUE SF4 M 900
13
CC6
SOFTWARE
ILE N:146 , CYS N:506 , CYS N:509 , CYS N:518 , LEU N:527 , CYS N:528 , CYS N:595 , CYS N:597 , CU1 N:901
BINDING SITE FOR RESIDUE SF4 N 900
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1mjgm_ (M:)
1b: SCOP_d1mjgn_ (N:)
1c: SCOP_d1mjgo_ (O:)
1d: SCOP_d1mjgp_ (P:)
2a: SCOP_d1mjga_ (A:)
2b: SCOP_d1mjgb_ (B:)
2c: SCOP_d1mjgc_ (C:)
2d: SCOP_d1mjgd_ (D:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Prismane protein-like
(31)
Superfamily
:
Prismane protein-like
(31)
Family
:
Acetyl-CoA synthase
(6)
Protein domain
:
Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit
(2)
Moorella thermoacetica [TaxId: 1525]
(2)
1a
d1mjgm_
M:
1b
d1mjgn_
N:
1c
d1mjgo_
O:
1d
d1mjgp_
P:
Family
:
Carbon monoxide dehydrogenase
(15)
Protein domain
:
Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit
(2)
Moorella thermoacetica [TaxId: 1525]
(2)
2a
d1mjga_
A:
2b
d1mjgb_
B:
2c
d1mjgc_
C:
2d
d1mjgd_
D:
[
close SCOP info
]
CATH Domains
(6, 32)
Info
all CATH domains
1a: CATH_1mjgM03 (M:339-493)
1b: CATH_1mjgN03 (N:339-493)
1c: CATH_1mjgO03 (O:339-493)
1d: CATH_1mjgP03 (P:339-493)
2a: CATH_1mjgM05 (M:599-728)
2b: CATH_1mjgN05 (N:599-728)
2c: CATH_1mjgO05 (O:599-728)
2d: CATH_1mjgP05 (P:599-728)
3a: CATH_1mjgM04 (M:494-584)
3b: CATH_1mjgN04 (N:494-584)
3c: CATH_1mjgO04 (O:494-584)
3d: CATH_1mjgP04 (P:494-584)
4a: CATH_1mjgA02 (A:260-430)
4b: CATH_1mjgA01 (A:433-660)
4c: CATH_1mjgB01 (B:433-660)
4d: CATH_1mjgC01 (C:433-660)
4e: CATH_1mjgD01 (D:433-660)
4f: CATH_1mjgM02 (M:130-313)
4g: CATH_1mjgN02 (N:130-313)
4h: CATH_1mjgO02 (O:130-313)
4i: CATH_1mjgP02 (P:130-313)
4j: CATH_1mjgB02 (B:260-430)
4k: CATH_1mjgC02 (C:260-430)
4l: CATH_1mjgD02 (D:260-430)
5a: CATH_1mjgM01 (M:2-129)
5b: CATH_1mjgN01 (N:2-129)
5c: CATH_1mjgO01 (O:2-129)
5d: CATH_1mjgP01 (P:2-129)
6a: CATH_1mjgA03 (A:83-259)
6b: CATH_1mjgB03 (B:83-259)
6c: CATH_1mjgC03 (C:83-259)
6d: CATH_1mjgD03 (D:83-259)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3
(6)
Homologous Superfamily
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3
(6)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
1a
1mjgM03
M:339-493
1b
1mjgN03
N:339-493
1c
1mjgO03
O:339-493
1d
1mjgP03
P:339-493
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5
(6)
Homologous Superfamily
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5
(6)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
2a
1mjgM05
M:599-728
2b
1mjgN05
N:599-728
2c
1mjgO05
O:599-728
2d
1mjgP05
P:599-728
Topology
:
Ribonuclease HI; Chain A
(10)
Homologous Superfamily
:
Carbon monoxide dehydrogenase alpha subunit. Chain D, domain 4
(6)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
3a
1mjgM04
M:494-584
3b
1mjgN04
N:494-584
3c
1mjgO04
O:494-584
3d
1mjgP04
P:494-584
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2030, no name defined]
(25)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
4a
1mjgA02
A:260-430
4b
1mjgA01
A:433-660
4c
1mjgB01
B:433-660
4d
1mjgC01
C:433-660
4e
1mjgD01
D:433-660
4f
1mjgM02
M:130-313
4g
1mjgN02
N:130-313
4h
1mjgO02
O:130-313
4i
1mjgP02
P:130-313
4j
1mjgB02
B:260-430
4k
1mjgC02
C:260-430
4l
1mjgD02
D:260-430
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1
(6)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
5a
1mjgM01
M:2-129
5b
1mjgN01
N:2-129
5c
1mjgO01
O:2-129
5d
1mjgP01
P:2-129
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
[code=1.20.1270.30, no name defined]
(14)
Moorella thermoacetica. Organism_taxid: 1525.
(3)
6a
1mjgA03
A:83-259
6b
1mjgB03
B:83-259
6c
1mjgC03
C:83-259
6d
1mjgD03
D:83-259
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_CdhC_1mjgP01 (P:317-729)
1b: PFAM_CdhC_1mjgP02 (P:317-729)
1c: PFAM_CdhC_1mjgP03 (P:317-729)
1d: PFAM_CdhC_1mjgP04 (P:317-729)
2a: PFAM_Prismane_1mjgD01 (D:66-642)
2b: PFAM_Prismane_1mjgD02 (D:66-642)
2c: PFAM_Prismane_1mjgD03 (D:66-642)
2d: PFAM_Prismane_1mjgD04 (D:66-642)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: CdhC]
(4)
Family
:
CdhC
(4)
Moorella thermoacetica (Clostridium thermoaceticum)
(3)
1a
CdhC-1mjgP01
P:317-729
1b
CdhC-1mjgP02
P:317-729
1c
CdhC-1mjgP03
P:317-729
1d
CdhC-1mjgP04
P:317-729
Clan
:
no clan defined [family: Prismane]
(9)
Family
:
Prismane
(9)
Moorella thermoacetica (Clostridium thermoaceticum)
(3)
2a
Prismane-1mjgD01
D:66-642
2b
Prismane-1mjgD02
D:66-642
2c
Prismane-1mjgD03
D:66-642
2d
Prismane-1mjgD04
D:66-642
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Asym.Unit (901 KB)
Header - Asym.Unit
Biol.Unit 1 (457 KB)
Header - Biol.Unit 1
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