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Getting 'Exon' information from database.
1MI1
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PH-BEACH DOMAIN OF HUMAN NEUROBEACHIN
Authors
:
G. Jogl, Y. Shen, D. Gebauer, J. Li, K. Wiegmann, H. Kashkar, M. Kroenke, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date
:
21 Aug 02 (Deposition) - 27 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ph Domain, Beach Domain, Vesicle Trafficking, Signal Transduction, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Jogl, Y. Shen, D. Gebauer, J. Li, K. Wiegmann, H. Kashkar, M. Kronke, L. Tong
Crystal Structure Of The Beach Domain Reveals An Unusual Fold And Extensive Association With A Novel Ph Domain.
Embo J. V. 21 4785 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 16)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047659 (I2491V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047659
I
2501
V
NBEA_HUMAN
Polymorphism
11538677
A/B
I
2491
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BEACH (A:2264-2553,B:2264-2553)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BEACH
PS50197
BEACH domain profile.
NBEA_HUMAN
2274-2563
2
A:2264-2553
B:2264-2553
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.42 (A:2140-2140 | B:2140-2140)
Exon 1.43 (A:2140-2185 | B:2140-2185)
Exon 1.44 (A:2186-2225 | B:2186-2225)
Exon 1.45 (A:2225-2259 | B:2225-2259)
Exon 1.46 (A:2259-2298 | B:2259-2298)
Exon 1.47 (A:2298-2335 | B:2298-2335)
Exon 1.48 (A:2336-2382 | B:2336-2382)
Exon 1.49b (A:2383-2422 | B:2383-2422)
Exon 1.50 (A:2423-2473 | B:2423-2473 (gaps))
Exon 1.51 (A:2474-2529 | B:2474-2529)
Exon 1.53 (A:2530-2553 | B:2530-2553)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.41/1.42
02: Boundary 1.42/1.43
03: Boundary 1.43/1.44
04: Boundary 1.44/1.45
05: Boundary 1.45/1.46
06: Boundary 1.46/1.47
07: Boundary 1.47/1.48
08: Boundary 1.48/1.49b
09: Boundary 1.49b/1.50
10: Boundary 1.50/1.51
11: Boundary 1.51/1.53
12: Boundary 1.53/1.54
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000400445
1
ENSE00001483361
chr13:
35516456-35516500
45
NBEA_HUMAN
-
0
0
-
-
1.2
ENST00000400445
2
ENSE00002193524
chr13:
35516797-35517251
455
NBEA_HUMAN
1-98
98
0
-
-
1.3
ENST00000400445
3
ENSE00001604367
chr13:
35615070-35615301
232
NBEA_HUMAN
99-176
78
0
-
-
1.4
ENST00000400445
4
ENSE00001617230
chr13:
35619084-35619184
101
NBEA_HUMAN
176-209
34
0
-
-
1.5
ENST00000400445
5
ENSE00001628436
chr13:
35619443-35619538
96
NBEA_HUMAN
210-241
32
0
-
-
1.6
ENST00000400445
6
ENSE00001596242
chr13:
35622700-35622821
122
NBEA_HUMAN
242-282
41
0
-
-
1.7
ENST00000400445
7
ENSE00001632619
chr13:
35624406-35624532
127
NBEA_HUMAN
282-324
43
0
-
-
1.8
ENST00000400445
8
ENSE00001769363
chr13:
35630147-35630266
120
NBEA_HUMAN
325-364
40
0
-
-
1.9
ENST00000400445
9
ENSE00001781062
chr13:
35632854-35633000
147
NBEA_HUMAN
365-413
49
0
-
-
1.10a
ENST00000400445
10a
ENSE00001623961
chr13:
35644045-35644242
198
NBEA_HUMAN
414-479
66
0
-
-
1.11a
ENST00000400445
11a
ENSE00001700531
chr13:
35644856-35644989
134
NBEA_HUMAN
480-524
45
0
-
-
1.12
ENST00000400445
12
ENSE00001739929
chr13:
35672434-35672542
109
NBEA_HUMAN
524-560
37
0
-
-
1.13
ENST00000400445
13
ENSE00001725063
chr13:
35683427-35683579
153
NBEA_HUMAN
561-611
51
0
-
-
1.14
ENST00000400445
14
ENSE00001606244
chr13:
35684947-35685115
169
NBEA_HUMAN
612-668
57
0
-
-
1.15
ENST00000400445
15
ENSE00001697764
chr13:
35691551-35691630
80
NBEA_HUMAN
668-694
27
0
-
-
1.16
ENST00000400445
16
ENSE00001738284
chr13:
35692365-35692427
63
NBEA_HUMAN
695-715
21
0
-
-
1.17
ENST00000400445
17
ENSE00001687681
chr13:
35692514-35692611
98
NBEA_HUMAN
716-748
33
0
-
-
1.18
ENST00000400445
18
ENSE00001652091
chr13:
35697619-35697711
93
NBEA_HUMAN
748-779
32
0
-
-
1.19
ENST00000400445
19
ENSE00001735748
chr13:
35716406-35716514
109
NBEA_HUMAN
779-815
37
0
-
-
1.20
ENST00000400445
20
ENSE00001737878
chr13:
35729911-35729992
82
NBEA_HUMAN
816-843
28
0
-
-
1.21
ENST00000400445
21
ENSE00001698962
chr13:
35730220-35730343
124
NBEA_HUMAN
843-884
42
0
-
-
1.22
ENST00000400445
22
ENSE00001712465
chr13:
35731215-35731407
193
NBEA_HUMAN
884-948
65
0
-
-
1.23
ENST00000400445
23
ENSE00001760697
chr13:
35733153-35734169
1017
NBEA_HUMAN
949-1287
339
0
-
-
1.24
ENST00000400445
24
ENSE00001660809
chr13:
35735887-35736104
218
NBEA_HUMAN
1288-1360
73
0
-
-
1.25a
ENST00000400445
25a
ENSE00001483255
chr13:
35738493-35738646
154
NBEA_HUMAN
1360-1411
52
0
-
-
1.26
ENST00000400445
26
ENSE00001792523
chr13:
35743124-35743132
9
NBEA_HUMAN
1412-1414
3
0
-
-
1.28b
ENST00000400445
28b
ENSE00001093038
chr13:
35745409-35745589
181
NBEA_HUMAN
1415-1475
61
0
-
-
1.29
ENST00000400445
29
ENSE00001694286
chr13:
35747601-35747731
131
NBEA_HUMAN
1475-1518
44
0
-
-
1.30
ENST00000400445
30
ENSE00001678406
chr13:
35751133-35751240
108
NBEA_HUMAN
1519-1554
36
0
-
-
1.31
ENST00000400445
31
ENSE00001736656
chr13:
35756497-35756665
169
NBEA_HUMAN
1555-1611
57
0
-
-
1.32
ENST00000400445
32
ENSE00001631716
chr13:
35758113-35758208
96
NBEA_HUMAN
1611-1643
33
0
-
-
1.33
ENST00000400445
33
ENSE00001648177
chr13:
35770001-35770439
439
NBEA_HUMAN
1643-1789
147
0
-
-
1.34
ENST00000400445
34
ENSE00001599744
chr13:
35782837-35782991
155
NBEA_HUMAN
1789-1841
53
0
-
-
1.35
ENST00000400445
35
ENSE00001666195
chr13:
35785190-35785316
127
NBEA_HUMAN
1841-1883
43
0
-
-
1.36
ENST00000400445
36
ENSE00001775070
chr13:
35806629-35806756
128
NBEA_HUMAN
1883-1926
44
0
-
-
1.37
ENST00000400445
37
ENSE00001705300
chr13:
35864526-35864587
62
NBEA_HUMAN
1926-1946
21
0
-
-
1.38
ENST00000400445
38
ENSE00001750561
chr13:
35883665-35883729
65
NBEA_HUMAN
1947-1968
22
0
-
-
1.39
ENST00000400445
39
ENSE00001665411
chr13:
35923245-35923353
109
NBEA_HUMAN
1968-2004
37
0
-
-
1.40
ENST00000400445
40
ENSE00001788989
chr13:
35926294-35926460
167
NBEA_HUMAN
2005-2060
56
0
-
-
1.41
ENST00000400445
41
ENSE00001719886
chr13:
36006406-36006530
125
NBEA_HUMAN
2060-2102
43
0
-
-
1.42
ENST00000400445
42
ENSE00001693067
chr13:
36026229-36026372
144
NBEA_HUMAN
2102-2150
49
2
A:2140-2140
B:2140-2140
1
1
1.43
ENST00000400445
43
ENSE00001788293
chr13:
36046537-36046673
137
NBEA_HUMAN
2150-2195
46
2
A:2140-2185
B:2140-2185
46
46
1.44
ENST00000400445
44
ENSE00001661953
chr13:
36124614-36124731
118
NBEA_HUMAN
2196-2235
40
2
A:2186-2225
B:2186-2225
40
40
1.45
ENST00000400445
45
ENSE00001710491
chr13:
36125067-36125169
103
NBEA_HUMAN
2235-2269
35
2
A:2225-2259
B:2225-2259
35
35
1.46
ENST00000400445
46
ENSE00001776405
chr13:
36129124-36129239
116
NBEA_HUMAN
2269-2308
40
2
A:2259-2298
B:2259-2298
40
40
1.47
ENST00000400445
47
ENSE00001725002
chr13:
36141042-36141154
113
NBEA_HUMAN
2308-2345
38
2
A:2298-2335
B:2298-2335
38
38
1.48
ENST00000400445
48
ENSE00001640038
chr13:
36158035-36158175
141
NBEA_HUMAN
2346-2392
47
2
A:2336-2382
B:2336-2382
47
47
1.49b
ENST00000400445
49b
ENSE00001638980
chr13:
36167465-36167584
120
NBEA_HUMAN
2393-2432
40
2
A:2383-2422
B:2383-2422
40
40
1.50
ENST00000400445
50
ENSE00001776223
chr13:
36180563-36180715
153
NBEA_HUMAN
2433-2483
51
2
A:2423-2473
B:2423-2473 (gaps)
51
51
1.51
ENST00000400445
51
ENSE00001736958
chr13:
36202218-36202385
168
NBEA_HUMAN
2484-2539
56
2
A:2474-2529
B:2474-2529
56
56
1.53
ENST00000400445
53
ENSE00000817062
chr13:
36220396-36220485
90
NBEA_HUMAN
2540-2569
30
2
A:2530-2553
B:2530-2553
24
24
1.54
ENST00000400445
54
ENSE00001285208
chr13:
36223792-36223984
193
NBEA_HUMAN
2570-2634
65
0
-
-
1.55
ENST00000400445
55
ENSE00001285783
chr13:
36225942-36226013
72
NBEA_HUMAN
2634-2658
25
0
-
-
1.56
ENST00000400445
56
ENSE00000938858
chr13:
36228992-36229147
156
NBEA_HUMAN
2658-2710
53
0
-
-
1.57
ENST00000400445
57
ENSE00000938859
chr13:
36229716-36229886
171
NBEA_HUMAN
2710-2767
58
0
-
-
1.58
ENST00000400445
58
ENSE00001285764
chr13:
36239222-36239323
102
NBEA_HUMAN
2767-2801
35
0
-
-
1.59
ENST00000400445
59
ENSE00000938861
chr13:
36241511-36241707
197
NBEA_HUMAN
2801-2866
66
0
-
-
1.60
ENST00000400445
60
ENSE00001285746
chr13:
36242505-36242656
152
NBEA_HUMAN
2867-2917
51
0
-
-
1.61a
ENST00000400445
61a
ENSE00001418403
chr13:
36245038-36246872
1835
NBEA_HUMAN
2917-2946
30
0
-
-
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1mi1a1 (A:2249-2553)
1b: SCOP_d1mi1b1 (B:2249-2553)
2a: SCOP_d1mi1a2 (A:2140-2248)
2b: SCOP_d1mi1b2 (B:2140-2248)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
BEACH domain
(2)
Superfamily
:
BEACH domain
(2)
Family
:
BEACH domain
(2)
Protein domain
:
BEACH domain of neurobeachin
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1mi1a1
A:2249-2553
1b
d1mi1b1
B:2249-2553
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
PreBEACH PH-like domain
(2)
Protein domain
:
PH-like domain of neurobeachin
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1mi1a2
A:2140-2248
2b
d1mi1b2
B:2140-2248
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1mi1A02 (A:2265-2553)
1b: CATH_1mi1B02 (B:2265-2553)
2a: CATH_1mi1A01 (A:2140-2244)
2b: CATH_1mi1B01 (B:2140-2244)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Neurobeachin; Chain: A, domain 1
(2)
Homologous Superfamily
:
[code=1.10.1540.10, no name defined]
(2)
Human (Homo sapiens)
(2)
1a
1mi1A02
A:2265-2553
1b
1mi1B02
B:2265-2553
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
PH domain-like; domain 1
(2)
Human (Homo sapiens)
(2)
2a
1mi1A01
A:2140-2244
2b
1mi1B01
B:2140-2244
[
close CATH info
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Beach_1mi1B01 (B:2276-2553)
1b: PFAM_Beach_1mi1B02 (B:2276-2553)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Beach]
(2)
Family
:
Beach
(2)
Homo sapiens (Human)
(2)
1a
Beach-1mi1B01
B:2276-2553
1b
Beach-1mi1B02
B:2276-2553
[
close Pfam info
]
Atom Selection
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)
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Nucleic
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Solvent
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
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