1MI1 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE PH-BEACH DOMAIN OF HUMAN NEUROBEACHIN

Authors :   G. Jogl, Y. Shen, D. Gebauer, J. Li, K. Wiegmann, H. Kashkar, M. Kroenke, L. Tong, Northeast Structural Genomics Consortium (Nesg)

Date :   21 Aug 02 (Deposition) - 27 Sep 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Ph Domain, Beach Domain, Vesicle Trafficking, Signal Transduction, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Jogl, Y. Shen, D. Gebauer, J. Li, K. Wiegmann, H. Kashkar, M. Kronke, L. Tong
Crystal Structure Of The Beach Domain Reveals An Unusual Fold And Extensive Association With A Novel Ph Domain.
Embo J. V. 21 4785 2002
PubMed-ID: 12234919 | Reference-DOI: 10.1093/EMBOJ/CDF502
(for further references see the PDB file header)

Molecule 1 - NEUROBEACHIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	DL41
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 2150-2563 OF GB ENTRY AAM53531
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BCL8B PROTEIN; KIAA1544 PROTEIN

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1MI1)

(no "SS Bond" information available for 1MI1)

Asymmetric/Biological Unit

No.	Residues
1	Glu A:2383	-	Pro A:2384
2	Glu B:2383	-	Pro B:2384

Asymmetric/Biological Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_047659	I	2501	V	NBEA_HUMAN	Polymorphism	11538677	A/B	I	2491	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BEACH	PS50197	BEACH domain profile.	NBEA_HUMAN	2274-2563	2	A:2264-2553 B:2264-2553

Asymmetric/Biological Unit (11, 22)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000400445	1	ENSE00001483361	chr13:35516456-35516500	45	NBEA_HUMAN	-	0	0	-	-
1.2	ENST00000400445	2	ENSE00002193524	chr13:35516797-35517251	455	NBEA_HUMAN	1-98	98	0	-	-
1.3	ENST00000400445	3	ENSE00001604367	chr13:35615070-35615301	232	NBEA_HUMAN	99-176	78	0	-	-
1.4	ENST00000400445	4	ENSE00001617230	chr13:35619084-35619184	101	NBEA_HUMAN	176-209	34	0	-	-
1.5	ENST00000400445	5	ENSE00001628436	chr13:35619443-35619538	96	NBEA_HUMAN	210-241	32	0	-	-
1.6	ENST00000400445	6	ENSE00001596242	chr13:35622700-35622821	122	NBEA_HUMAN	242-282	41	0	-	-
1.7	ENST00000400445	7	ENSE00001632619	chr13:35624406-35624532	127	NBEA_HUMAN	282-324	43	0	-	-
1.8	ENST00000400445	8	ENSE00001769363	chr13:35630147-35630266	120	NBEA_HUMAN	325-364	40	0	-	-
1.9	ENST00000400445	9	ENSE00001781062	chr13:35632854-35633000	147	NBEA_HUMAN	365-413	49	0	-	-
1.10a	ENST00000400445	10a	ENSE00001623961	chr13:35644045-35644242	198	NBEA_HUMAN	414-479	66	0	-	-
1.11a	ENST00000400445	11a	ENSE00001700531	chr13:35644856-35644989	134	NBEA_HUMAN	480-524	45	0	-	-
1.12	ENST00000400445	12	ENSE00001739929	chr13:35672434-35672542	109	NBEA_HUMAN	524-560	37	0	-	-
1.13	ENST00000400445	13	ENSE00001725063	chr13:35683427-35683579	153	NBEA_HUMAN	561-611	51	0	-	-
1.14	ENST00000400445	14	ENSE00001606244	chr13:35684947-35685115	169	NBEA_HUMAN	612-668	57	0	-	-
1.15	ENST00000400445	15	ENSE00001697764	chr13:35691551-35691630	80	NBEA_HUMAN	668-694	27	0	-	-
1.16	ENST00000400445	16	ENSE00001738284	chr13:35692365-35692427	63	NBEA_HUMAN	695-715	21	0	-	-
1.17	ENST00000400445	17	ENSE00001687681	chr13:35692514-35692611	98	NBEA_HUMAN	716-748	33	0	-	-
1.18	ENST00000400445	18	ENSE00001652091	chr13:35697619-35697711	93	NBEA_HUMAN	748-779	32	0	-	-
1.19	ENST00000400445	19	ENSE00001735748	chr13:35716406-35716514	109	NBEA_HUMAN	779-815	37	0	-	-
1.20	ENST00000400445	20	ENSE00001737878	chr13:35729911-35729992	82	NBEA_HUMAN	816-843	28	0	-	-
1.21	ENST00000400445	21	ENSE00001698962	chr13:35730220-35730343	124	NBEA_HUMAN	843-884	42	0	-	-
1.22	ENST00000400445	22	ENSE00001712465	chr13:35731215-35731407	193	NBEA_HUMAN	884-948	65	0	-	-
1.23	ENST00000400445	23	ENSE00001760697	chr13:35733153-35734169	1017	NBEA_HUMAN	949-1287	339	0	-	-
1.24	ENST00000400445	24	ENSE00001660809	chr13:35735887-35736104	218	NBEA_HUMAN	1288-1360	73	0	-	-
1.25a	ENST00000400445	25a	ENSE00001483255	chr13:35738493-35738646	154	NBEA_HUMAN	1360-1411	52	0	-	-
1.26	ENST00000400445	26	ENSE00001792523	chr13:35743124-35743132	9	NBEA_HUMAN	1412-1414	3	0	-	-
1.28b	ENST00000400445	28b	ENSE00001093038	chr13:35745409-35745589	181	NBEA_HUMAN	1415-1475	61	0	-	-
1.29	ENST00000400445	29	ENSE00001694286	chr13:35747601-35747731	131	NBEA_HUMAN	1475-1518	44	0	-	-
1.30	ENST00000400445	30	ENSE00001678406	chr13:35751133-35751240	108	NBEA_HUMAN	1519-1554	36	0	-	-
1.31	ENST00000400445	31	ENSE00001736656	chr13:35756497-35756665	169	NBEA_HUMAN	1555-1611	57	0	-	-
1.32	ENST00000400445	32	ENSE00001631716	chr13:35758113-35758208	96	NBEA_HUMAN	1611-1643	33	0	-	-
1.33	ENST00000400445	33	ENSE00001648177	chr13:35770001-35770439	439	NBEA_HUMAN	1643-1789	147	0	-	-
1.34	ENST00000400445	34	ENSE00001599744	chr13:35782837-35782991	155	NBEA_HUMAN	1789-1841	53	0	-	-
1.35	ENST00000400445	35	ENSE00001666195	chr13:35785190-35785316	127	NBEA_HUMAN	1841-1883	43	0	-	-
1.36	ENST00000400445	36	ENSE00001775070	chr13:35806629-35806756	128	NBEA_HUMAN	1883-1926	44	0	-	-
1.37	ENST00000400445	37	ENSE00001705300	chr13:35864526-35864587	62	NBEA_HUMAN	1926-1946	21	0	-	-
1.38	ENST00000400445	38	ENSE00001750561	chr13:35883665-35883729	65	NBEA_HUMAN	1947-1968	22	0	-	-
1.39	ENST00000400445	39	ENSE00001665411	chr13:35923245-35923353	109	NBEA_HUMAN	1968-2004	37	0	-	-
1.40	ENST00000400445	40	ENSE00001788989	chr13:35926294-35926460	167	NBEA_HUMAN	2005-2060	56	0	-	-
1.41	ENST00000400445	41	ENSE00001719886	chr13:36006406-36006530	125	NBEA_HUMAN	2060-2102	43	0	-	-
1.42	ENST00000400445	42	ENSE00001693067	chr13:36026229-36026372	144	NBEA_HUMAN	2102-2150	49	2	A:2140-2140 B:2140-2140	1 1
1.43	ENST00000400445	43	ENSE00001788293	chr13:36046537-36046673	137	NBEA_HUMAN	2150-2195	46	2	A:2140-2185 B:2140-2185	46 46
1.44	ENST00000400445	44	ENSE00001661953	chr13:36124614-36124731	118	NBEA_HUMAN	2196-2235	40	2	A:2186-2225 B:2186-2225	40 40
1.45	ENST00000400445	45	ENSE00001710491	chr13:36125067-36125169	103	NBEA_HUMAN	2235-2269	35	2	A:2225-2259 B:2225-2259	35 35
1.46	ENST00000400445	46	ENSE00001776405	chr13:36129124-36129239	116	NBEA_HUMAN	2269-2308	40	2	A:2259-2298 B:2259-2298	40 40
1.47	ENST00000400445	47	ENSE00001725002	chr13:36141042-36141154	113	NBEA_HUMAN	2308-2345	38	2	A:2298-2335 B:2298-2335	38 38
1.48	ENST00000400445	48	ENSE00001640038	chr13:36158035-36158175	141	NBEA_HUMAN	2346-2392	47	2	A:2336-2382 B:2336-2382	47 47
1.49b	ENST00000400445	49b	ENSE00001638980	chr13:36167465-36167584	120	NBEA_HUMAN	2393-2432	40	2	A:2383-2422 B:2383-2422	40 40
1.50	ENST00000400445	50	ENSE00001776223	chr13:36180563-36180715	153	NBEA_HUMAN	2433-2483	51	2	A:2423-2473 B:2423-2473 (gaps)	51 51
1.51	ENST00000400445	51	ENSE00001736958	chr13:36202218-36202385	168	NBEA_HUMAN	2484-2539	56	2	A:2474-2529 B:2474-2529	56 56
1.53	ENST00000400445	53	ENSE00000817062	chr13:36220396-36220485	90	NBEA_HUMAN	2540-2569	30	2	A:2530-2553 B:2530-2553	24 24
1.54	ENST00000400445	54	ENSE00001285208	chr13:36223792-36223984	193	NBEA_HUMAN	2570-2634	65	0	-	-
1.55	ENST00000400445	55	ENSE00001285783	chr13:36225942-36226013	72	NBEA_HUMAN	2634-2658	25	0	-	-
1.56	ENST00000400445	56	ENSE00000938858	chr13:36228992-36229147	156	NBEA_HUMAN	2658-2710	53	0	-	-
1.57	ENST00000400445	57	ENSE00000938859	chr13:36229716-36229886	171	NBEA_HUMAN	2710-2767	58	0	-	-
1.58	ENST00000400445	58	ENSE00001285764	chr13:36239222-36239323	102	NBEA_HUMAN	2767-2801	35	0	-	-
1.59	ENST00000400445	59	ENSE00000938861	chr13:36241511-36241707	197	NBEA_HUMAN	2801-2866	66	0	-	-
1.60	ENST00000400445	60	ENSE00001285746	chr13:36242505-36242656	152	NBEA_HUMAN	2867-2917	51	0	-	-
1.61a	ENST00000400445	61a	ENSE00001418403	chr13:36245038-36246872	1835	NBEA_HUMAN	2917-2946	30	0	-	-

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:414
 aligned with NBEA_HUMAN | Q8NFP9 from UniProtKB/Swiss-Prot  Length:2946

    Alignment length:414
                                  2159      2169      2179      2189      2199      2209      2219      2229      2239      2249      2259      2269      2279      2289      2299      2309      2319      2329      2339      2349      2359      2369      2379      2389      2399      2409      2419      2429      2439      2449      2459      2469      2479      2489      2499      2509      2519      2529      2539      2549      2559    
          NBEA_HUMAN   2150 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPR 2563
               SCOP domains d1mi1a2 A:2140-2248 PH-like domain of neurobeachin                                                           d1mi1a1 A:2249-2553 BEACH domain of neurobeachin                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1mi1A01 A:2140-2244 PH domain-like; domain 1                                                             --------------------1mi1A02 A:2265-2553  [code=1.10.1540.10, no name defined]                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeee..eeeeeeeee...eeeeee...hhhhhh.hhhhhhhh.....eee...eeeeeeeee..eeeeeeeee....eeeee..hhhhhhhhhhh..............hhhhhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhhh.....hhhhh..................hhhhh.....hhhhhhhhhhhhhhhhhhh................hhhhhhhhh....hhhhhhhhh.............hhhhhhhhhhhh.......hhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh...................hhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------BEACH  PDB: A:2264-2553 UniProt: 2274-2563                                                                                                                                                                                                                                                         PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.44  PDB: A:2186-2225             ---------------------------------Exon 1.46  PDB: A:2259-2298             -------------------------------------Exon 1.48  PDB: A:2336-2382 UniProt: 2346-2392 Exon 1.49b  PDB: A:2383-2422            Exon 1.50  PDB: A:2423-2473 UniProt: 2433-2483     Exon 1.51  PDB: A:2474-2529 UniProt: 2484-2539          Exon 1.53 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) Exon 1.43  PDB: A:2140-2185 UniProt: 2150-2195---------------------------------------Exon 1.45  PDB: A:2225-2259        --------------------------------------Exon 1.47  PDB: A:2298-2335           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1mi1 A 2140 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWmFSEIRAVFSRRYLLQNTALEVFmANRTSVmFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNmTQRWQRREISNFEYLmFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEmFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRmALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAmEAQIQNFGQTPSQLLIEPHPPR 2553
                                  2149      2159      2169      2179      2189      2199      2209      2219 |    2229      2239      2249      2259      2269     |2279      2289 |    2299      2309      2319      2329      2339      2349      2359      2369      2379      2389      2399      2409      2419      2429    | 2439      2449      2459      2469   |  2479      2489      2499      2509      2519      2529 |    2539      2549    
                                                                                   2198-MSE               2221-MSE  |                                           2275-MSE        2291-MSE                                                                                                                                       2434-MSE                               2473-MSE                                                  2531-MSE                  
                                                                                                                 2228-MSE

Chain B from PDB  Type:PROTEIN  Length:400
 aligned with NBEA_HUMAN | Q8NFP9 from UniProtKB/Swiss-Prot  Length:2946

    Alignment length:414
                                  2159      2169      2179      2189      2199      2209      2219      2229      2239      2249      2259      2269      2279      2289      2299      2309      2319      2329      2339      2349      2359      2369      2379      2389      2399      2409      2419      2429      2439      2449      2459      2469      2479      2489      2499      2509      2519      2529      2539      2549      2559    
          NBEA_HUMAN   2150 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPR 2563
               SCOP domains d1mi1b2 B:2140-2248 PH-like domain of neurobeachin                                                           d1mi1b1 B:2249-2553 BEACH domain of neurobeachin                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1mi1B01 B:2140-2244 PH domain-like; domain 1                                                             --------------------1mi1B02 B:2265-2553  [code=1.10.1540.10, no name defined]                                                                                                                                                                                                                                         CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------Beach-1mi1B01 B:2276-2553                                                                                                                                                                                                                                                              Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------Beach-1mi1B02 B:2276-2553                                                                                                                                                                                                                                                              Pfam domains (2)
         Sec.struct. author ....eeeeeeeee..eeeeeeeee...eeeeee...hhhhhhhhhhhhhh....eeeee...eeeeeeeee..eeeeeeeee....eeeee..hhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhh..................hhhhh.....hhhhhhhhhhhhhhhhhhh................hhhhhhhhh....hhhhhhhhhh.....hhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhh..--------------..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..........hhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------BEACH  PDB: B:2264-2553 UniProt: 2274-2563                                                                                                                                                                                                                                                         PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.44  PDB: B:2186-2225             ---------------------------------Exon 1.46  PDB: B:2259-2298             -------------------------------------Exon 1.48  PDB: B:2336-2382 UniProt: 2346-2392 Exon 1.49b  PDB: B:2383-2422            Exon 1.50  PDB: B:2423-2473 (gaps)                 Exon 1.51  PDB: B:2474-2529 UniProt: 2484-2539          Exon 1.53 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) Exon 1.43  PDB: B:2140-2185 UniProt: 2150-2195---------------------------------------Exon 1.45  PDB: B:2225-2259        --------------------------------------Exon 1.47  PDB: B:2298-2335           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                1mi1 B 2140 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWmFSEIRAVFSRRYLLQNTALEVFmANRTSVmFNFPDQATVKKVVYSLPRVGVGTSYGLPQARRISLATPRQLYKSSNmTQRWQRREISNFEYLmFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEmFVNS--------------NDVDLPPWAKKPEDFVRINRmALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAmEAQIQNFGQTPSQLLIEPHPPR 2553
                                  2149      2159      2169      2179      2189      2199      2209      2219 |    2229      2239      2249      2259      2269     |2279      2289 |    2299      2309      2319      2329      2339      2349      2359      2369      2379      2389      2399      2409      2419      2429    |   |-         -   |  2459      2469   |  2479      2489      2499      2509      2519      2529 |    2539      2549    
                                                                                   2198-MSE               2221-MSE  |                                           2275-MSE        2291-MSE                                                                                                                                       2434-MSE           2453                2473-MSE                                                  2531-MSE                  
                                                                                                                 2228-MSE                                                                                                                                                                                                          2438

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: BEACH domain (2)

Superfamily: BEACH domain (2)

Family: BEACH domain (2)

Protein domain: BEACH domain of neurobeachin (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1mi1a1	A:2249-2553
1b	d1mi1b1	B:2249-2553

Class: All beta proteins (24004)

Fold: PH domain-like barrel (258)

Superfamily: PH domain-like (257)

Family: PreBEACH PH-like domain (2)

Protein domain: PH-like domain of neurobeachin (1)

Human (Homo sapiens) [TaxId: 9606] (1)

2a	d1mi1a2	A:2140-2248
2b	d1mi1b2	B:2140-2248

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Neurobeachin; Chain: A, domain 1 (2)

Homologous Superfamily: [code=1.10.1540.10, no name defined] (2)

Human (Homo sapiens) (2)

1a	1mi1A02	A:2265-2553
1b	1mi1B02	B:2265-2553

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: PH-domain like (150)

Homologous Superfamily: PH domain-like; domain 1 (2)

Human (Homo sapiens) (2)

2a	1mi1A01	A:2140-2244
2b	1mi1B01	B:2140-2244

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Beach] (2)

Family: Beach (2)

Homo sapiens (Human) (2)

1a	Beach-1mi1B01	B:2276-2553
1b	Beach-1mi1B02	B:2276-2553

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (NBEA_HUMAN | Q8NFP9)

molecular function
	GO:0019901	protein kinase binding	Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
	GO:0008104	protein localization	Any process in which a protein is transported to, or maintained in, a specific location.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0012505	endomembrane system	A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0005802	trans-Golgi network	The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Sites
(no "Sites" information available for 1mi1)

	Cis Peptide Bonds
		Glu A:2383 - Pro A:2384	[ RasMol ]
		Glu B:2383 - Pro B:2384	[ RasMol ]

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	1mi1
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	NBEA_HUMAN \| Q8NFP9
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(no "Entries Sharing at Least One Protein Chain" available for 1MI1)

(no "Related Entries Specified in the PDB File" available for 1MI1)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 16)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (1, 2)

Exons (11, 22)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (2, 4)

Pfam Domains (1, 2)

Gene Ontology (8, 8)

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Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File