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Asym.Unit (59 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA
Authors
:
Y. Shi
Date
:
18 Aug 98 (Deposition) - 18 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Complex (Transcription Activator/Dna), Smad3 Mh1, Smad Binding Element, Dna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Shi, Y. F. Wang, L. Jayaraman, H. Yang, J. Massague, N. P. Pavletich
Crystal Structure Of A Smad Mh1 Domain Bound To Dna: Insights On Dna Binding In Tgf-Beta Signaling.
Cell(Cambridge, Mass. ) V. 94 585 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067051 (A112V, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067051
A
112
V
SMAD3_HUMAN
Disease (LDS3)
---
A/B
A
112
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MH1 (A:10-132,B:10-132)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MH1
PS51075
MAD homology domain 1 (MH1) profile.
SMAD3_HUMAN
10-136
2
A:10-132
B:10-132
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Exons
(2, 4)
Info
All Exons
Exon 1.1 (A:10-69 | B:10-69)
Exon 1.3 (A:69-132 | B:69-132)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.3
3: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000327367
1
ENSE00001346645
chr15:
67358183-67358698
516
SMAD3_HUMAN
1-69
69
2
A:10-69
B:10-69
60
60
1.3
ENST00000327367
3
ENSE00001108083
chr15:
67457233-67457426
194
SMAD3_HUMAN
69-134
66
2
A:69-132
B:69-132
64
64
1.4
ENST00000327367
4
ENSE00001299299
chr15:
67457591-67457722
132
SMAD3_HUMAN
134-178
45
0
-
-
1.5
ENST00000327367
5
ENSE00001639631
chr15:
67459117-67459191
75
SMAD3_HUMAN
178-203
26
0
-
-
1.6
ENST00000327367
6
ENSE00001108077
chr15:
67462892-67462942
51
SMAD3_HUMAN
203-220
18
0
-
-
1.7
ENST00000327367
7
ENSE00001108067
chr15:
67473579-67473791
213
SMAD3_HUMAN
220-291
72
0
-
-
1.8
ENST00000327367
8
ENSE00001108070
chr15:
67477065-67477202
138
SMAD3_HUMAN
291-337
47
0
-
-
1.9
ENST00000327367
9
ENSE00001684341
chr15:
67479703-67479847
145
SMAD3_HUMAN
337-385
49
0
-
-
1.10b
ENST00000327367
10b
ENSE00001346632
chr15:
67482751-67487533
4783
SMAD3_HUMAN
385-425
41
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1mhda_ (A:)
1b: SCOP_d1mhdb_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SMAD MH1 domain
(4)
Superfamily
:
SMAD MH1 domain
(4)
Family
:
SMAD MH1 domain
(3)
Protein domain
:
SMAD MH1 domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1mhda_
A:
1b
d1mhdb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1mhdA00 (A:10-132)
1b: CATH_1mhdB00 (B:10-132)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Smad3; Chain A
(3)
Homologous Superfamily
:
Smad3; Chain A
(3)
[unclassified]
(2)
1a
1mhdA00
A:10-132
1b
1mhdB00
B:10-132
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_MH1_1mhdB01 (B:31-131)
1b: PFAM_MH1_1mhdB02 (B:31-131)
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Clans
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(
)
Clan
:
His-Me_finger
(38)
Family
:
MH1
(4)
Homo sapiens (Human)
(2)
1a
MH1-1mhdB01
B:31-131
1b
MH1-1mhdB02
B:31-131
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