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1MDI
Asym. Unit
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Asym.Unit (37 KB)
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(1)
Title
:
HIGH RESOLUTION SOLUTION NMR STRUCTURE OF MIXED DISULFIDE INTERMEDIATE BETWEEN MUTANT HUMAN THIOREDOXIN AND A 13 RESIDUE PEPTIDE COMPRISING ITS TARGET SITE IN HUMAN NFKB
Authors
:
G. M. Clore, J. Qin, A. M. Gronenborn
Date
:
27 Feb 95 (Deposition) - 03 Jun 95 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B
Keywords
:
Complex (Electron Transport/Peptide)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Qin, G. M. Clore, W. M. Kennedy, J. R. Huth, A. M. Gronenborn
Solution Structure Of Human Thioredoxin In A Mixed Disulfide Intermediate Complex With Its Target Peptide From The Transcription Factor Nf Kappa B.
Structure V. 3 289 1995
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:1-105)
2: THIOREDOXIN_1 (A:24-42)
3: REL_1 (B:3-9)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
THIO_HUMAN
1-105
1
A:1-105
2
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
THIO_HUMAN
24-42
1
A:24-42
3
REL_1
PS01204
NF-kappa-B/Rel/dorsal domain signature.
NFKB1_HUMAN
57-63
1
B:3-9
[
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]
Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:1-8)
Exon 1.2 (A:9-43)
Exon 1.3 (A:44-63)
Exon 1.4b (A:64-85)
Exon 1.5b (A:86-105)
Exon 2.8d (B:1-13)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5b
6: Boundary 1.5b/-
7: Boundary 2.7b/2.8d
8: Boundary 2.8d/2.10b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000374517
1a
ENSE00001463713
chr9:
113018920-113018692
229
THIO_HUMAN
1-8
8
1
A:1-8
8
1.2
ENST00000374517
2
ENSE00000806083
chr9:
113013742-113013638
105
THIO_HUMAN
9-43
35
1
A:9-43
35
1.3
ENST00000374517
3
ENSE00000806082
chr9:
113013159-113013100
60
THIO_HUMAN
44-63
20
1
A:44-63
20
1.4b
ENST00000374517
4b
ENSE00000806081
chr9:
113007123-113007058
66
THIO_HUMAN
64-85
22
1
A:64-85
22
1.5b
ENST00000374517
5b
ENSE00001945358
chr9:
113006499-113006091
409
THIO_HUMAN
86-105
20
1
A:86-105
20
2.1b
ENST00000394820
1b
ENSE00002081373
chr4:
103422488-103422945
458
NFKB1_HUMAN
-
0
0
-
-
2.5
ENST00000394820
5
ENSE00001008675
chr4:
103446669-103446714
46
NFKB1_HUMAN
1-13
13
0
-
-
2.6
ENST00000394820
6
ENSE00000734504
chr4:
103450993-103451071
79
NFKB1_HUMAN
14-40
27
0
-
-
2.7b
ENST00000394820
7b
ENSE00001519710
chr4:
103455005-103455042
38
NFKB1_HUMAN
40-52
13
0
-
-
2.8d
ENST00000394820
8d
ENSE00000801437
chr4:
103459015-103459113
99
NFKB1_HUMAN
53-85
33
1
B:1-13
13
2.10b
ENST00000394820
10b
ENSE00000801436
chr4:
103488144-103488292
149
NFKB1_HUMAN
86-135
50
0
-
-
2.11b
ENST00000394820
11b
ENSE00002185014
chr4:
103498033-103498196
164
NFKB1_HUMAN
135-190
56
0
-
-
2.13b
ENST00000394820
13b
ENSE00000801434
chr4:
103500038-103500196
159
NFKB1_HUMAN
190-243
54
0
-
-
2.14b
ENST00000394820
14b
ENSE00000801433
chr4:
103501692-103501796
105
NFKB1_HUMAN
243-278
36
0
-
-
2.15
ENST00000394820
15
ENSE00000801432
chr4:
103504023-103504114
92
NFKB1_HUMAN
278-308
31
0
-
-
2.16
ENST00000394820
16
ENSE00000801431
chr4:
103505839-103505977
139
NFKB1_HUMAN
309-355
47
0
-
-
2.17b
ENST00000394820
17b
ENSE00002163400
chr4:
103514582-103514725
144
NFKB1_HUMAN
355-403
49
0
-
-
2.18
ENST00000394820
18
ENSE00000734990
chr4:
103516049-103516138
90
NFKB1_HUMAN
403-433
31
0
-
-
2.19b
ENST00000394820
19b
ENSE00000801428
chr4:
103517295-103517489
195
NFKB1_HUMAN
433-498
66
0
-
-
2.20
ENST00000394820
20
ENSE00000801427
chr4:
103518677-103518818
142
NFKB1_HUMAN
498-545
48
0
-
-
2.21
ENST00000394820
21
ENSE00000801426
chr4:
103522052-103522166
115
NFKB1_HUMAN
545-583
39
0
-
-
2.22
ENST00000394820
22
ENSE00000801425
chr4:
103527653-103527854
202
NFKB1_HUMAN
584-651
68
0
-
-
2.23
ENST00000394820
23
ENSE00000801424
chr4:
103528307-103528476
170
NFKB1_HUMAN
651-707
57
0
-
-
2.24
ENST00000394820
24
ENSE00000735164
chr4:
103528806-103528908
103
NFKB1_HUMAN
708-742
35
0
-
-
2.25
ENST00000394820
25
ENSE00000735167
chr4:
103531732-103531856
125
NFKB1_HUMAN
742-783
42
0
-
-
2.26
ENST00000394820
26
ENSE00000801421
chr4:
103533201-103533267
67
NFKB1_HUMAN
784-806
23
0
-
-
2.27
ENST00000394820
27
ENSE00000735200
chr4:
103533591-103533763
173
NFKB1_HUMAN
806-863
58
0
-
-
2.28
ENST00000394820
28
ENSE00000801419
chr4:
103534582-103534738
157
NFKB1_HUMAN
864-916
53
0
-
-
2.29a
ENST00000394820
29a
ENSE00001519708
chr4:
103537591-103538072
482
NFKB1_HUMAN
916-968
53
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mdia_ (A:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Thioltransferase
(167)
Protein domain
:
Thioredoxin
(106)
Human (Homo sapiens) [TaxId: 9606]
(29)
1a
d1mdia_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mdiA00 (A:1-105)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1mdiA00
A:1-105
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_RHD_1mdiB01 (B:1-13)
2a: PFAM_Thioredoxin_1mdiA01 (A:2-104)
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(
)
Clan
:
P53-like
(54)
Family
:
RHD
(21)
Homo sapiens (Human)
(13)
1a
RHD-1mdiB01
B:1-13
Clan
:
Thioredoxin
(367)
Family
:
Thioredoxin
(82)
Homo sapiens (Human)
(20)
2a
Thioredoxin-1mdiA01
A:2-104
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