PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1M9I
Asym. Unit
Info
Asym.Unit (116 KB)
Biol.Unit 1 (111 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHORYLATION-MIMICKING MUTANT T356D OF ANNEXIN VI
Authors
:
C. Freye-Minks, R. H. Kretsinger, C. E. Creutz
Date
:
29 Jul 02 (Deposition) - 07 Aug 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Annexin, Calcium-Binding, Membrane-Binding, Phosphorylation, Mutant T356D, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Freye-Minks, R. H. Kretsinger, C. E. Creutz
Structural And Dynamic Changes In Human Annexin Vi Induced By A Phosphorylation-Mimicking Mutation, T356D
Biochemistry V. 42 620 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
5
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:376 , GLY A:378 , LEU A:379 , GLY A:380 , GLU A:420
BINDING SITE FOR RESIDUE CA A 701
2
AC2
SOFTWARE
MET A:264 , GLY A:266 , GLY A:268 , ASP A:308
BINDING SITE FOR RESIDUE CA A 702
3
AC3
SOFTWARE
MET A:612 , GLY A:614 , ALA A:615 , GLY A:616 , ASP A:656 , HOH A:770
BINDING SITE FOR RESIDUE CA A 703
4
AC4
SOFTWARE
MET A:448 , GLU A:449 , GLY A:450 , GLY A:452 , ASP A:492
BINDING SITE FOR RESIDUE CA A 704
5
AC5
SOFTWARE
MET A:33 , LYS A:34 , GLY A:35 , GLY A:37 , GLU A:77
BINDING SITE FOR RESIDUE CA A 705
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:37-89|A:109-161|A:193-245|A:268-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANXA6_HUMAN
37-89
109-161
193-245
268-320
380-432
452-504
541-593
616-668
8
A:37-89
A:109-161
A:193-245
A:268-320
A:380-432
A:452-504
A:541-593
A:616-668
[
close PROSITE info
]
Exons
(24, 24)
Info
All Exons
Exon 1.7 (A:10-37)
Exon 1.8a (A:37-68)
Exon 1.8e (A:69-106)
Exon 1.9c (A:107-137)
Exon 1.10b (A:137-163)
Exon 1.11 (A:164-182)
Exon 1.12b (A:183-214)
Exon 1.13 (A:214-246)
Exon 1.14 (A:246-265)
Exon 1.15b (A:266-306)
Exon 1.16b (A:307-326)
Exon 1.17b (A:326-352)
Exon 1.18 (A:353-380)
Exon 1.19 (A:380-411)
Exon 1.20b (A:412-449)
Exon 1.21b (A:450-480)
Exon 1.22 (A:480-506)
Exon 1.23 (A:507-524)
Exon 1.24 (A:525-530)
Exon 1.25 (A:531-562)
Exon 1.26 (A:562-594)
Exon 1.27a (A:594-613)
Exon 1.28 (A:614-654)
Exon 1.29e (A:655-673)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4/1.7
02: Boundary 1.7/1.8a
03: Boundary 1.8a/1.8e
04: Boundary 1.8e/1.9c
05: Boundary 1.9c/1.10b
06: Boundary 1.10b/1.11
07: Boundary 1.11/1.12b
08: Boundary 1.12b/1.13
09: Boundary 1.13/1.14
10: Boundary 1.14/1.15b
11: Boundary 1.15b/1.16b
12: Boundary 1.16b/1.17b
13: Boundary 1.17b/1.18
14: Boundary 1.18/1.19
15: Boundary 1.19/1.20b
16: Boundary 1.20b/1.21b
17: Boundary 1.21b/1.22
18: Boundary 1.22/1.23
19: Boundary 1.23/1.24
20: Boundary 1.24/1.25
21: Boundary 1.25/1.26
22: Boundary 1.26/1.27a
23: Boundary 1.27a/1.28
24: Boundary 1.28/1.29e
25: Boundary 1.29e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000354546
1a
ENSE00002093216
chr5:
150537443-150537241
203
ANXA6_HUMAN
-
0
0
-
-
1.4
ENST00000354546
4
ENSE00002168415
chr5:
150527487-150527445
43
ANXA6_HUMAN
1-6
6
0
-
-
1.7
ENST00000354546
7
ENSE00001033507
chr5:
150519804-150519714
91
ANXA6_HUMAN
7-37
31
1
A:10-37
28
1.8a
ENST00000354546
8a
ENSE00000841253
chr5:
150519008-150518914
95
ANXA6_HUMAN
37-68
32
1
A:37-68
32
1.8e
ENST00000354546
8e
ENSE00000767772
chr5:
150518352-150518239
114
ANXA6_HUMAN
69-106
38
1
A:69-106
38
1.9c
ENST00000354546
9c
ENSE00000767771
chr5:
150516882-150516792
91
ANXA6_HUMAN
107-137
31
1
A:107-137
31
1.10b
ENST00000354546
10b
ENSE00000767770
chr5:
150515896-150515817
80
ANXA6_HUMAN
137-163
27
1
A:137-163
27
1.11
ENST00000354546
11
ENSE00002157799
chr5:
150514044-150513988
57
ANXA6_HUMAN
164-182
19
1
A:164-182
19
1.12b
ENST00000354546
12b
ENSE00000767768
chr5:
150512748-150512655
94
ANXA6_HUMAN
183-214
32
1
A:183-214
32
1.13
ENST00000354546
13
ENSE00000767767
chr5:
150512132-150512037
96
ANXA6_HUMAN
214-246
33
1
A:214-246
33
1.14
ENST00000354546
14
ENSE00000767766
chr5:
150510850-150510792
59
ANXA6_HUMAN
246-265
20
1
A:246-265
20
1.15b
ENST00000354546
15b
ENSE00000767765
chr5:
150509090-150508968
123
ANXA6_HUMAN
266-306
41
1
A:266-306
41
1.16b
ENST00000354546
16b
ENSE00000767764
chr5:
150507800-150507742
59
ANXA6_HUMAN
307-326
20
1
A:307-326
20
1.17b
ENST00000354546
17b
ENSE00000767763
chr5:
150506041-150505963
79
ANXA6_HUMAN
326-352
27
1
A:326-352
27
1.18
ENST00000354546
18
ENSE00000767762
chr5:
150503928-150503847
82
ANXA6_HUMAN
353-380
28
1
A:353-380
28
1.19
ENST00000354546
19
ENSE00000767761
chr5:
150502572-150502478
95
ANXA6_HUMAN
380-411
32
1
A:380-411
32
1.20b
ENST00000354546
20b
ENSE00000767760
chr5:
150501821-150501708
114
ANXA6_HUMAN
412-449
38
1
A:412-449
38
1.21b
ENST00000354546
21b
ENSE00000767759
chr5:
150498951-150498861
91
ANXA6_HUMAN
450-480
31
1
A:450-480
31
1.22
ENST00000354546
22
ENSE00000767758
chr5:
150497398-150497319
80
ANXA6_HUMAN
480-506
27
1
A:480-506
27
1.23
ENST00000354546
23
ENSE00000841252
chr5:
150496741-150496688
54
ANXA6_HUMAN
507-524
18
1
A:507-524
18
1.24
ENST00000354546
24
ENSE00001610337
chr5:
150490205-150490188
18
ANXA6_HUMAN
525-530
6
1
A:525-530
6
1.25
ENST00000354546
25
ENSE00000767756
chr5:
150489407-150489314
94
ANXA6_HUMAN
531-562
32
1
A:531-562
32
1.26
ENST00000354546
26
ENSE00000767755
chr5:
150488111-150488016
96
ANXA6_HUMAN
562-594
33
1
A:562-594
33
1.27a
ENST00000354546
27a
ENSE00000767754
chr5:
150484864-150484806
59
ANXA6_HUMAN
594-613
20
1
A:594-613
20
1.28
ENST00000354546
28
ENSE00000972889
chr5:
150483253-150483131
123
ANXA6_HUMAN
614-654
41
1
A:614-654
41
1.29e
ENST00000354546
29e
ENSE00002130581
chr5:
150481068-150480666
403
ANXA6_HUMAN
655-673
19
1
A:655-673
19
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1m9ia1 (A:10-350)
1b: SCOP_d1m9ia2 (A:351-673)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
Annexin
(56)
Protein domain
:
Annexin VI
(2)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d1m9ia1
A:10-350
1b
d1m9ia2
A:351-673
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1m9iA02 (A:91-168)
1b: CATH_1m9iA03 (A:169-251)
1c: CATH_1m9iA07 (A:511-599)
1d: CATH_1m9iA05 (A:363-436)
1e: CATH_1m9iA01 (A:11-90)
1f: CATH_1m9iA04 (A:252-323)
1g: CATH_1m9iA08 (A:600-669)
1h: CATH_1m9iA06 (A:437-510)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Human (Homo sapiens)
(22)
1a
1m9iA02
A:91-168
1b
1m9iA03
A:169-251
1c
1m9iA07
A:511-599
1d
1m9iA05
A:363-436
1e
1m9iA01
A:11-90
1f
1m9iA04
A:252-323
1g
1m9iA08
A:600-669
1h
1m9iA06
A:437-510
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Annexin_1m9iA01 (A:603-668)
1b: PFAM_Annexin_1m9iA02 (A:603-668)
1c: PFAM_Annexin_1m9iA03 (A:603-668)
1d: PFAM_Annexin_1m9iA04 (A:603-668)
1e: PFAM_Annexin_1m9iA05 (A:603-668)
1f: PFAM_Annexin_1m9iA06 (A:603-668)
1g: PFAM_Annexin_1m9iA07 (A:603-668)
1h: PFAM_Annexin_1m9iA08 (A:603-668)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Annexin]
(14)
Family
:
Annexin
(14)
Homo sapiens (Human)
(4)
1a
Annexin-1m9iA01
A:603-668
1b
Annexin-1m9iA02
A:603-668
1c
Annexin-1m9iA03
A:603-668
1d
Annexin-1m9iA04
A:603-668
1e
Annexin-1m9iA05
A:603-668
1f
Annexin-1m9iA06
A:603-668
1g
Annexin-1m9iA07
A:603-668
1h
Annexin-1m9iA08
A:603-668
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (116 KB)
Header - Asym.Unit
Biol.Unit 1 (111 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1M9I
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help