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1M8O
Asym. Unit
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Asym.Unit (400 KB)
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Models
(20 )
Title
:
PLATELET INTEGRIN ALFAIIB-BETA3 CYTOPLASMIC DOMAIN
Authors
:
O. Vinogradova, A. Velyvis, A. Velyviene, B. Hu, T. Haas, E. F. Plow, J. Qin
Date
:
25 Jul 02 (Deposition) - 18 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Alfa Helix, Platelet, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Vinogradova, A. Velyvis, A. Velyviene, B. Hu, T. A. Haas, E. F. Plow, J. Qin
A Structural Mechanism Of Integrin Alfaiib Beta3 "Inside-Out" Activation As Regulated By Its Cytoplasmic Face.
Cell(Cambridge, Mass. ) V. 110 587 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_030468 (R7Q, chain A, )
2: VAR_069919 (R7W, chain A, )
3: VAR_069924 (D28H, chain B, )
4: VAR_004005 (S57P, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030468
R
1026
Q
ITA2B_HUMAN
Disease (GT)
---
A
R
7
Q
2
UniProt
VAR_069919
R
1026
W
ITA2B_HUMAN
Disease (BDPLT16)
---
A
R
7
W
3
UniProt
VAR_069924
D
749
H
ITB3_HUMAN
Disease (BDPLT16)
---
B
D
28
H
4
UniProt
VAR_004005
S
778
P
ITB3_HUMAN
Disease (GT)
---
B
S
57
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(2, 2)
Info
All Exons
Exon 1.29 (A:1-1)
Exon 1.30 (A:2-20)
View:
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All Exon Boundaries
1: Boundary 1.28/1.29
2: Boundary 1.29/1.30
3: Boundary 1.30/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262407
1
ENSE00000854286
chr17:
42466873-42466654
220
ITA2B_HUMAN
1-63
63
0
-
-
1.2
ENST00000262407
2
ENSE00000390828
chr17:
42463499-42463378
122
ITA2B_HUMAN
63-104
42
0
-
-
1.3
ENST00000262407
3
ENSE00000732018
chr17:
42463289-42463192
98
ITA2B_HUMAN
104-136
33
0
-
-
1.4
ENST00000262407
4
ENSE00000732019
chr17:
42463084-42462919
166
ITA2B_HUMAN
137-192
56
0
-
-
1.5
ENST00000262407
5
ENSE00001504857
chr17:
42462703-42462654
50
ITA2B_HUMAN
192-208
17
0
-
-
1.6
ENST00000262407
6
ENSE00001504855
chr17:
42462577-42462532
46
ITA2B_HUMAN
209-224
16
0
-
-
1.7
ENST00000262407
7
ENSE00000854285
chr17:
42462444-42462316
129
ITA2B_HUMAN
224-267
44
0
-
-
1.8
ENST00000262407
8
ENSE00001504854
chr17:
42461953-42461906
48
ITA2B_HUMAN
267-283
17
0
-
-
1.9
ENST00000262407
9
ENSE00000854284
chr17:
42461722-42461679
44
ITA2B_HUMAN
283-297
15
0
-
-
1.10
ENST00000262407
10
ENSE00000732026
chr17:
42461506-42461453
54
ITA2B_HUMAN
298-315
18
0
-
-
1.11
ENST00000262407
11
ENSE00000732027
chr17:
42461314-42461262
53
ITA2B_HUMAN
316-333
18
0
-
-
1.12
ENST00000262407
12
ENSE00000732028
chr17:
42461072-42460861
212
ITA2B_HUMAN
333-404
72
0
-
-
1.13
ENST00000262407
13
ENSE00000732030
chr17:
42458429-42458247
183
ITA2B_HUMAN
404-465
62
0
-
-
1.14
ENST00000262407
14
ENSE00000732031
chr17:
42458013-42457968
46
ITA2B_HUMAN
465-480
16
0
-
-
1.15
ENST00000262407
15
ENSE00000732032
chr17:
42457858-42457754
105
ITA2B_HUMAN
480-515
36
0
-
-
1.16
ENST00000262407
16
ENSE00000732033
chr17:
42457669-42457614
56
ITA2B_HUMAN
515-534
20
0
-
-
1.17
ENST00000262407
17
ENSE00000732034
chr17:
42457521-42457370
152
ITA2B_HUMAN
534-584
51
0
-
-
1.18
ENST00000262407
18
ENSE00000732036
chr17:
42457182-42457057
126
ITA2B_HUMAN
585-626
42
0
-
-
1.19
ENST00000262407
19
ENSE00000732038
chr17:
42456078-42456011
68
ITA2B_HUMAN
627-649
23
0
-
-
1.20
ENST00000262407
20
ENSE00000732040
chr17:
42455877-42455730
148
ITA2B_HUMAN
649-698
50
0
-
-
1.21
ENST00000262407
21
ENSE00000732042
chr17:
42455158-42455066
93
ITA2B_HUMAN
699-729
31
0
-
-
1.22
ENST00000262407
22
ENSE00000732043
chr17:
42454456-42454377
80
ITA2B_HUMAN
730-756
27
0
-
-
1.23
ENST00000262407
23
ENSE00000732044
chr17:
42453756-42453676
81
ITA2B_HUMAN
756-783
28
0
-
-
1.24
ENST00000262407
24
ENSE00000732045
chr17:
42453552-42453453
100
ITA2B_HUMAN
783-816
34
0
-
-
1.25
ENST00000262407
25
ENSE00000732046
chr17:
42453353-42453201
153
ITA2B_HUMAN
817-867
51
0
-
-
1.26a
ENST00000262407
26a
ENSE00000732047
chr17:
42453084-42452959
126
ITA2B_HUMAN
868-909
42
0
-
-
1.27
ENST00000262407
27
ENSE00000732049
chr17:
42452479-42452366
114
ITA2B_HUMAN
910-947
38
0
-
-
1.28
ENST00000262407
28
ENSE00001321776
chr17:
42452128-42452027
102
ITA2B_HUMAN
948-981
34
0
-
-
1.29
ENST00000262407
29
ENSE00000854277
chr17:
42451838-42451722
117
ITA2B_HUMAN
982-1020
39
1
A:1-1
1
1.30
ENST00000262407
30
ENSE00000854276
chr17:
42449791-42449550
242
ITA2B_HUMAN
1021-1039
19
1
A:2-20
19
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1m8oa_ (A:)
2a: SCOP_d1m8ob_ (B:)
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Organisms
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Class
:
Peptides
(792)
Fold
:
Integrin fragments
(13)
Superfamily
:
Integrin fragments
(13)
Family
:
Integrin fragments
(13)
Protein domain
:
Cytoplasmic domain of the integrin alpha-iib subunit
(5)
Synthetic
(5)
1a
d1m8oa_
A:
Protein domain
:
Cytoplasmic domain of the integrin beta-3
(4)
Synthetic
(4)
2a
d1m8ob_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1m8oB00 (B:21-67)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(1)
Human (Homo sapiens)
(1)
1a
1m8oB00
B:21-67
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Integrin_alpha_1m8oA01 (A:1-15)
2a: PFAM_Integrin_b_cyt_1m8oB01 (B:21-67)
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Clans
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(
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(
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(
)
Clan
:
no clan defined [family: Integrin_alpha]
(7)
Family
:
Integrin_alpha
(7)
Homo sapiens (Human)
(7)
1a
Integrin_alpha-1m8oA01
A:1-15
Clan
:
no clan defined [family: Integrin_b_cyt]
(11)
Family
:
Integrin_b_cyt
(11)
Homo sapiens (Human)
(11)
2a
Integrin_b_cyt-1m8oB01
B:21-67
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